Variant report

Variant	rs71426310
Chromosome Location	chr2:213462054-213462055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:213460436..213462639-chr2:213462830..213465484,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs11676119	0.92[ASN][1000 genomes]
rs11678993	0.92[ASN][1000 genomes]
rs11679805	0.85[ASN][1000 genomes]
rs11682441	1.00[ASN][1000 genomes]
rs11683491	1.00[ASN][1000 genomes]
rs11685022	1.00[ASN][1000 genomes]
rs11688167	1.00[ASN][1000 genomes]
rs11693009	1.00[ASN][1000 genomes]
rs11693575	1.00[ASN][1000 genomes]
rs11892049	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11894305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11894309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13000533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13021394	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13021610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13027061	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13410624	0.85[ASN][1000 genomes]
rs17264055	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17264097	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17271707	1.00[ASN][1000 genomes]
rs17272024	1.00[ASN][1000 genomes]
rs17329875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17330001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17330768	1.00[ASN][1000 genomes]
rs17331220	1.00[ASN][1000 genomes]
rs34071063	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34446807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34741122	1.00[ASN][1000 genomes]
rs34804588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35119835	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35521899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36042629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36125860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57917865	0.85[ASN][1000 genomes]
rs59370887	1.00[ASN][1000 genomes]
rs60327012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61521361	0.85[ASN][1000 genomes]
rs62186337	1.00[ASN][1000 genomes]
rs62187960	1.00[ASN][1000 genomes]
rs66535530	1.00[ASN][1000 genomes]
rs6742665	0.92[ASN][1000 genomes]
rs6742793	1.00[ASN][1000 genomes]
rs67447343	0.85[ASN][1000 genomes]
rs6745180	1.00[ASN][1000 genomes]
rs71426309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72933016	1.00[ASN][1000 genomes]
rs72937329	0.85[ASN][1000 genomes]
rs72937330	1.00[ASN][1000 genomes]
rs72937331	1.00[ASN][1000 genomes]
rs72937333	1.00[ASN][1000 genomes]
rs72937335	1.00[ASN][1000 genomes]
rs72937340	1.00[ASN][1000 genomes]
rs72937345	1.00[ASN][1000 genomes]
rs72937349	1.00[ASN][1000 genomes]
rs72937365	1.00[ASN][1000 genomes]
rs72937368	1.00[ASN][1000 genomes]
rs72937385	1.00[ASN][1000 genomes]
rs72949011	1.00[ASN][1000 genomes]
rs72949015	1.00[ASN][1000 genomes]
rs72949018	1.00[ASN][1000 genomes]
rs72949040	1.00[ASN][1000 genomes]
rs73987421	1.00[ASN][1000 genomes]
rs931215	1.00[ASN][1000 genomes]
rs931217	1.00[ASN][1000 genomes]
rs931218	1.00[ASN][1000 genomes]
rs956558	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213458000-213462600	Weak transcription	NHEK	skin
2	chr2:213460200-213463000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:213460400-213462200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:213460400-213462600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:213460800-213462200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:213461600-213462400	Weak transcription	HMEC	breast
7	chr2:213461600-213462600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr2:213461600-213462800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:213461800-213462600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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