Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:213460436..213462639-chr2:213462830..213465484,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11892049	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs11894305	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11894309	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13000533	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13021394	0.88[CEU][hapmap];0.88[YRI][hapmap];0.89[EUR][1000 genomes]
rs13021610	0.87[CEU][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13027061	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs17264097	0.89[EUR][1000 genomes]
rs17329875	0.88[CEU][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17330001	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1878566	0.89[CEU][hapmap]
rs34071063	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34446807	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs34804588	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs35119835	0.89[EUR][1000 genomes]
rs35521899	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs36042629	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs36125860	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs60327012	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs71426309	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs71426310	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213458000-213462600	Weak transcription	NHEK	skin
2	chr2:213460200-213463000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:213460400-213462200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:213460400-213462600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:213460800-213462200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:213461600-213462400	Weak transcription	HMEC	breast
7	chr2:213461600-213462600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr2:213461600-213462800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:213461800-213462600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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