Variant report

Variant	rs6435715
Chromosome Location	chr2:213519256-213519257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10174150	0.83[ASN][1000 genomes]
rs10198723	0.84[EUR][1000 genomes]
rs10221625	0.85[EUR][1000 genomes]
rs10221626	0.85[EUR][1000 genomes]
rs11676391	0.83[ASN][1000 genomes]
rs11687307	0.84[EUR][1000 genomes]
rs11692809	0.83[ASN][1000 genomes]
rs11695521	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11896992	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1320116	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13386921	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13394068	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13395632	0.81[ASN][1000 genomes]
rs13397735	0.84[EUR][1000 genomes]
rs13404902	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13422625	0.85[EUR][1000 genomes]
rs13431135	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13431628	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1384297	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1600883	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1600884	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2054613	0.83[ASN][1000 genomes]
rs2054615	0.83[ASN][1000 genomes]
rs2068404	0.83[ASN][1000 genomes]
rs2128324	0.83[ASN][1000 genomes]
rs2220026	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2371710	0.94[ASN][1000 genomes]
rs2888128	0.91[ASN][1000 genomes]
rs4337429	0.94[ASN][1000 genomes]
rs4673669	0.80[ASN][1000 genomes]
rs4673673	0.94[ASN][1000 genomes]
rs4673674	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4673675	0.86[EUR][1000 genomes]
rs4673676	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs5000270	0.84[EUR][1000 genomes]
rs58184703	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62187963	0.84[EUR][1000 genomes]
rs62187964	0.84[EUR][1000 genomes]
rs62187967	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62187968	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6435716	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6435717	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6706987	0.83[ASN][1000 genomes]
rs6708862	0.82[ASN][1000 genomes]
rs6711917	0.82[ASN][1000 genomes]
rs6712252	0.82[ASN][1000 genomes]
rs6742665	0.84[EUR][1000 genomes]
rs6743091	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6749009	0.83[ASN][1000 genomes]
rs6749157	0.83[ASN][1000 genomes]
rs6750857	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67535717	0.83[ASN][1000 genomes]
rs6761880	0.83[ASN][1000 genomes]
rs72933003	0.94[ASN][1000 genomes]
rs72933004	0.94[ASN][1000 genomes]
rs72933008	0.94[ASN][1000 genomes]
rs72951177	0.91[ASN][1000 genomes]
rs72951178	0.91[ASN][1000 genomes]
rs7572637	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7585465	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7587236	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7590349	0.84[EUR][1000 genomes]
rs7590700	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7601545	0.83[ASN][1000 genomes]
rs7606156	0.83[ASN][1000 genomes]
rs9288455	0.80[ASN][1000 genomes]
rs9967727	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213512400-213522200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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