Variant report

Variant	rs72951177
Chromosome Location	chr2:213517845-213517846
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10174150	0.80[ASN][1000 genomes]
rs11676119	0.83[EUR][1000 genomes]
rs11676391	0.80[ASN][1000 genomes]
rs11682441	0.83[EUR][1000 genomes]
rs11682456	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11683491	0.83[EUR][1000 genomes]
rs11688167	0.82[EUR][1000 genomes]
rs11688976	0.81[ASN][1000 genomes]
rs11692809	0.80[ASN][1000 genomes]
rs11693575	0.83[EUR][1000 genomes]
rs11695521	0.88[ASN][1000 genomes]
rs11896992	0.92[ASN][1000 genomes]
rs1320117	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13386921	0.92[ASN][1000 genomes]
rs13394068	0.88[ASN][1000 genomes]
rs13431135	0.89[ASN][1000 genomes]
rs13431628	0.88[ASN][1000 genomes]
rs1384297	0.97[ASN][1000 genomes]
rs1600883	0.92[ASN][1000 genomes]
rs1600884	0.91[ASN][1000 genomes]
rs17271707	0.83[EUR][1000 genomes]
rs17272381	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17331220	0.83[EUR][1000 genomes]
rs17331646	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17331821	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17331933	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17331989	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2054613	0.80[ASN][1000 genomes]
rs2054615	0.80[ASN][1000 genomes]
rs2068404	0.80[ASN][1000 genomes]
rs2128324	0.80[ASN][1000 genomes]
rs2220026	0.94[ASN][1000 genomes]
rs2371710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2371711	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2371712	0.83[AMR][1000 genomes]
rs2371714	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2888128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2888129	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2888130	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4335896	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4337429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4673673	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4673674	0.92[ASN][1000 genomes]
rs56249218	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58184703	0.92[ASN][1000 genomes]
rs59370887	0.83[EUR][1000 genomes]
rs62187967	0.95[ASN][1000 genomes]
rs62187968	0.95[ASN][1000 genomes]
rs6435715	0.91[ASN][1000 genomes]
rs6435716	0.92[ASN][1000 genomes]
rs6706987	0.80[ASN][1000 genomes]
rs6708862	0.82[ASN][1000 genomes]
rs6711917	0.82[ASN][1000 genomes]
rs6712252	0.82[ASN][1000 genomes]
rs6743091	0.89[ASN][1000 genomes]
rs6749009	0.80[ASN][1000 genomes]
rs6749157	0.80[ASN][1000 genomes]
rs6750857	0.92[ASN][1000 genomes]
rs6752019	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6752288	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67535717	0.80[ASN][1000 genomes]
rs6761880	0.80[ASN][1000 genomes]
rs72933003	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72933004	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72933008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72933016	0.80[EUR][1000 genomes]
rs72933051	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72933053	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72933070	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72933071	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72933073	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72933082	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72933094	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72933095	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72949011	0.82[EUR][1000 genomes]
rs72949015	0.83[EUR][1000 genomes]
rs72949018	0.83[EUR][1000 genomes]
rs72949040	0.83[EUR][1000 genomes]
rs72951178	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7572637	0.89[ASN][1000 genomes]
rs7585465	0.80[ASN][1000 genomes]
rs7587236	0.89[ASN][1000 genomes]
rs7590700	0.89[ASN][1000 genomes]
rs7601545	0.80[ASN][1000 genomes]
rs7606156	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213512400-213522200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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