Variant report

Variant	rs7606156
Chromosome Location	chr2:213485596-213485597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10174150	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11676391	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679805	0.91[EUR][1000 genomes]
rs11688976	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11692809	1.00[ASN][1000 genomes]
rs11695521	0.80[ASN][1000 genomes]
rs11896992	0.85[ASN][1000 genomes]
rs13386921	0.85[ASN][1000 genomes]
rs13394068	0.80[ASN][1000 genomes]
rs13395632	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13410624	0.90[EUR][1000 genomes]
rs13431135	0.81[ASN][1000 genomes]
rs13431628	0.80[ASN][1000 genomes]
rs1384297	0.83[ASN][1000 genomes]
rs1600883	0.85[ASN][1000 genomes]
rs1600884	0.83[ASN][1000 genomes]
rs1878566	1.00[CHB][hapmap]
rs2054613	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2054615	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068404	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2128324	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2220026	0.83[ASN][1000 genomes]
rs2371710	0.83[ASN][1000 genomes]
rs4337429	0.83[ASN][1000 genomes]
rs4673669	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4673673	0.83[ASN][1000 genomes]
rs4673674	0.85[ASN][1000 genomes]
rs57917865	0.91[EUR][1000 genomes]
rs58184703	0.85[ASN][1000 genomes]
rs61521361	0.91[EUR][1000 genomes]
rs62187967	0.82[ASN][1000 genomes]
rs62187968	0.82[ASN][1000 genomes]
rs6435715	0.83[ASN][1000 genomes]
rs6435716	0.85[ASN][1000 genomes]
rs6706987	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6708862	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6711917	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6712252	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6731808	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6743091	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs67447343	0.91[EUR][1000 genomes]
rs6749009	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6749157	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6750857	0.85[ASN][1000 genomes]
rs67535717	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6761880	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72933003	0.83[ASN][1000 genomes]
rs72933004	0.83[ASN][1000 genomes]
rs72933008	0.83[ASN][1000 genomes]
rs72951177	0.80[ASN][1000 genomes]
rs72951178	0.80[ASN][1000 genomes]
rs7572637	0.88[ASN][1000 genomes]
rs7580653	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7583787	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7585465	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7587236	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7590700	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7598633	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7601545	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9288454	0.83[AFR][1000 genomes]
rs9288455	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv875813	chr2:213480637-213509809	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213482400-213485600	Enhancers	HMEC	breast
2	chr2:213483000-213485600	Enhancers	NHEK	skin
3	chr2:213483200-213485600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:213485400-213504800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links