Variant report
| Variant | rs7575120 |
|---|---|
| Chromosome Location | chr2:213331173-213331174 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10168850 | 0.87[ASN][1000 genomes] |
| rs10194811 | 0.87[ASN][1000 genomes] |
| rs10497975 | 0.83[EUR][1000 genomes] |
| rs11675580 | 0.87[ASN][1000 genomes] |
| rs11888697 | 0.81[EUR][1000 genomes] |
| rs12987104 | 0.81[EUR][1000 genomes] |
| rs13000920 | 0.81[EUR][1000 genomes] |
| rs13015808 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs13389790 | 0.94[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs13430619 | 0.94[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1354617 | 0.95[ASN][1000 genomes] |
| rs1505370 | 0.85[EUR][1000 genomes] |
| rs1505371 | 0.83[EUR][1000 genomes] |
| rs1505372 | 0.84[ASN][1000 genomes] |
| rs1505377 | 0.81[EUR][1000 genomes] |
| rs16848556 | 0.87[ASN][1000 genomes] |
| rs16848564 | 0.87[ASN][1000 genomes] |
| rs16848571 | 0.87[ASN][1000 genomes] |
| rs16848593 | 1.00[ASN][1000 genomes] |
| rs17259208 | 0.91[ASN][1000 genomes] |
| rs17259910 | 0.83[EUR][1000 genomes] |
| rs17325612 | 0.84[EUR][1000 genomes] |
| rs17325821 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1921629 | 0.81[EUR][1000 genomes] |
| rs1982717 | 0.82[EUR][1000 genomes] |
| rs2062929 | 0.81[EUR][1000 genomes] |
| rs2062930 | 0.95[ASN][1000 genomes] |
| rs2062931 | 0.81[EUR][1000 genomes] |
| rs2101152 | 0.94[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2220024 | 1.00[ASN][1000 genomes] |
| rs34947061 | 0.83[EUR][1000 genomes] |
| rs35610945 | 0.81[EUR][1000 genomes] |
| rs55992489 | 0.95[ASN][1000 genomes] |
| rs56102637 | 0.82[EUR][1000 genomes] |
| rs62186292 | 0.85[EUR][1000 genomes] |
| rs73079459 | 0.95[ASN][1000 genomes] |
| rs73079470 | 0.95[ASN][1000 genomes] |
| rs979452 | 0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834527 | chr2:213115966-213334308 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionmiRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1004573 | chr2:213186537-213365252 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionmiRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv875811 | chr2:213200920-213347104 | Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionmiRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv432024 | chr2:213314899-213446726 | Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:213326800-213331400 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 2 | chr2:213328800-213334000 | Weak transcription | Fetal Heart | heart |
