Variant report

Variant	rs2062929
Chromosome Location	chr2:213313238-213313239
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10194811	0.80[YRI][hapmap]
rs10497975	0.94[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11675580	0.80[YRI][hapmap]
rs11888697	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11892661	0.85[EUR][1000 genomes]
rs12987104	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13000748	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13000920	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13015808	0.81[CEU][hapmap]
rs13027397	0.94[EUR][1000 genomes]
rs1505370	0.94[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1505371	0.94[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1505377	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17259910	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17261653	0.94[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17262115	0.94[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17325612	0.94[CEU][hapmap];0.95[EUR][1000 genomes]
rs17325821	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs17327185	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1921629	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1982717	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2062931	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34511581	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34947061	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35610945	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56102637	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56387110	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62186285	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62186286	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62186287	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62186292	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7575120	0.81[EUR][1000 genomes]
rs979452	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs982075	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834527	chr2:213115966-213334308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv875811	chr2:213200920-213347104	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213307200-213313800	Weak transcription	Fetal Kidney	kidney
2	chr2:213312200-213320400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:213312600-213314000	Enhancers	Brain Hippocampus Middle	brain
4	chr2:213312600-213315400	Enhancers	Fetal Heart	heart
5	chr2:213312600-213316000	Enhancers	HepG2	liver
6	chr2:213312800-213314000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr2:213312800-213314200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:213313200-213316400	Weak transcription	Brain Substantia Nigra	brain

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