Variant report

Variant	rs17262115
Chromosome Location	chr2:213398354-213398355
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:212099679..212101187-chr2:213398262..213400932,2	MCF-7	breast:
2	chr2:213392043..213394903-chr2:213396609..213399566,4	MCF-7	breast:
3	chr2:213392919..213394585-chr2:213396394..213398532,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10497975	0.95[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11888697	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11892661	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12987104	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13000748	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13000920	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13015808	0.80[CEU][hapmap]
rs13027397	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1505370	0.95[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1505371	0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1505377	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17259910	0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17261653	0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17325612	0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17325821	0.84[CEU][hapmap]
rs17327185	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1921629	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1982717	0.95[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2062929	0.94[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2062931	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34511581	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34947061	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35610945	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56102637	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56387110	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62186292	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62186293	1.00[ASN][1000 genomes]
rs979452	0.95[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs982075	0.94[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432024	chr2:213314899-213446726	Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1014479	chr2:213370690-213413231	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv875812	chr2:213395507-213434856	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213391600-213399200	Enhancers	Fetal Heart	heart
2	chr2:213393000-213399000	Weak transcription	Psoas Muscle	Psoas
3	chr2:213393000-213400800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr2:213393200-213399000	Weak transcription	Brain Angular Gyrus	brain
5	chr2:213393200-213400600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr2:213395200-213399600	Enhancers	Brain Substantia Nigra	brain
7	chr2:213395400-213398800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:213396000-213399000	Weak transcription	Aorta	Aorta
9	chr2:213396600-213400000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:213397000-213399000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr2:213397600-213398600	Weak transcription	Brain Hippocampus Middle	brain
12	chr2:213397600-213400200	Enhancers	Brain Anterior Caudate	brain
13	chr2:213398200-213398600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr2:213398200-213398600	Enhancers	Brain Cingulate Gyrus	brain

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