Variant report

Variant	rs1921629
Chromosome Location	chr2:213307202-213307203
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10497975	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11888697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11892661	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12987104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13000748	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13000920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13027397	0.94[EUR][1000 genomes]
rs1505370	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1505371	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1505377	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17259208	0.85[AFR][1000 genomes]
rs17259910	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17261653	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17262115	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17325612	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17325821	0.81[EUR][1000 genomes]
rs17327185	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1982717	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2062929	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2062931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34511581	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34947061	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35610945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56009609	0.81[AFR][1000 genomes]
rs56102637	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56387110	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62186285	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62186286	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62186287	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62186292	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7575120	0.81[EUR][1000 genomes]
rs979452	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs982075	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834527	chr2:213115966-213334308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv875811	chr2:213200920-213347104	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213307200-213308000	ZNF genes & repeats	Brain Hippocampus Middle	brain
2	chr2:213307200-213310200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:213307200-213313800	Weak transcription	Fetal Kidney	kidney

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