Variant report

Variant	rs13000920
Chromosome Location	chr2:213304744-213304745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10497975	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11888697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11892661	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12987104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13000748	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13027397	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13388843	1.00[ASN][1000 genomes]
rs1505370	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1505371	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1505377	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17259208	0.85[AFR][1000 genomes]
rs17259910	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17261653	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17262115	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17325612	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17325821	0.81[EUR][1000 genomes]
rs17327185	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1921629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1982717	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2062929	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2062931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34511581	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34947061	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35610945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56009609	0.81[AFR][1000 genomes]
rs56102637	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56387110	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62186285	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62186286	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62186287	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62186292	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7575120	0.81[EUR][1000 genomes]
rs979452	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs982075	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834527	chr2:213115966-213334308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv875811	chr2:213200920-213347104	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	esv34076	chr2:213298576-213306627	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213302000-213306600	Weak transcription	Aorta	Aorta

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