Variant report
Variant | rs6731193 |
---|---|
Chromosome Location | chr2:213379961-213379962 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10166052 | 0.90[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs10168850 | 0.89[CEU][hapmap];0.86[EUR][1000 genomes] |
rs10194811 | 0.89[CEU][hapmap];0.86[EUR][1000 genomes] |
rs11675580 | 0.88[CEU][hapmap];0.86[EUR][1000 genomes] |
rs11678974 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs11894208 | 0.81[CEU][hapmap] |
rs12694281 | 0.93[CEU][hapmap];0.83[EUR][1000 genomes] |
rs13389790 | 0.89[CEU][hapmap];0.87[EUR][1000 genomes] |
rs13390934 | 0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs13430619 | 0.86[EUR][1000 genomes] |
rs1354617 | 0.92[CEU][hapmap];0.95[EUR][1000 genomes] |
rs1505369 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs1505376 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
rs1546371 | 0.93[CEU][hapmap];0.84[EUR][1000 genomes] |
rs17325842 | 0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs1842767 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs1847671 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs2047950 | 0.84[EUR][1000 genomes] |
rs2062930 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes] |
rs2101152 | 0.87[EUR][1000 genomes] |
rs2128318 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs2170529 | 0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs2220024 | 0.93[EUR][1000 genomes] |
rs2371576 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs2860080 | 0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs55992489 | 0.95[EUR][1000 genomes] |
rs6435705 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs6723878 | 0.96[CEU][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs6735807 | 0.96[CEU][hapmap];0.93[EUR][1000 genomes] |
rs974968 | 0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv432024 | chr2:213314899-213446726 | Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
2 | nsv948878 | chr2:213345197-213534298 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv1008463 | chr2:213356335-213388695 | Enhancers ZNF genes & repeats Weak transcription Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
4 | nsv1014479 | chr2:213370690-213413231 | Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:213379000-213380800 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |