Variant report

Variant	rs6727182
Chromosome Location	chr2:211314564-211314565
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10804182	0.86[ASN][1000 genomes]
rs10804183	0.84[ASN][1000 genomes]
rs11889228	0.85[ASN][1000 genomes]
rs2287424	0.86[ASN][1000 genomes]
rs2287425	0.86[ASN][1000 genomes]
rs2287429	0.86[ASN][1000 genomes]
rs2287430	0.86[ASN][1000 genomes]
rs2287431	0.86[ASN][1000 genomes]
rs2287432	0.86[ASN][1000 genomes]
rs2370949	0.85[ASN][1000 genomes]
rs2887899	0.86[ASN][1000 genomes]
rs3755184	0.86[ASN][1000 genomes]
rs3770689	0.85[ASN][1000 genomes]
rs3770694	0.86[ASN][1000 genomes]
rs3770695	0.84[ASN][1000 genomes]
rs3845633	0.86[ASN][1000 genomes]
rs3856339	0.86[ASN][1000 genomes]
rs6755525	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6756422	0.86[ASN][1000 genomes]
rs725379	0.86[ASN][1000 genomes]
rs72930503	0.86[ASN][1000 genomes]
rs72930539	0.81[ASN][1000 genomes]
rs7578688	0.86[ASN][1000 genomes]
rs7595022	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012567	chr2:211087588-211315554	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv875767	chr2:211119233-211334647	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv3147	chr2:211281479-211326844	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211292400-211323000	Weak transcription	Fetal Brain Male	brain
2	chr2:211293800-211335400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:211294800-211322200	Weak transcription	K562	blood
4	chr2:211294800-211333200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:211295000-211330400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr2:211295000-211336000	Weak transcription	Colonic Mucosa	Colon
7	chr2:211295000-211340600	Weak transcription	HUVEC	blood vessel
8	chr2:211296000-211340200	Weak transcription	Small Intestine	intestine
9	chr2:211296400-211341000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr2:211297400-211321400	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr2:211297800-211336200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr2:211299400-211322600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr2:211299600-211322400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr2:211299800-211318600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr2:211299800-211330000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:211300200-211326000	Weak transcription	NHDF-Ad	bronchial
17	chr2:211300400-211329800	Weak transcription	A549	lung
18	chr2:211301200-211317000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr2:211301200-211319200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:211301200-211319200	Weak transcription	Fetal Stomach	stomach
21	chr2:211301200-211322400	Weak transcription	Aorta	Aorta
22	chr2:211301200-211322600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr2:211301200-211322600	Weak transcription	Pancreas	Pancrea
24	chr2:211301200-211322600	Weak transcription	Spleen	Spleen
25	chr2:211301200-211325400	Weak transcription	Esophagus	oesophagus
26	chr2:211301200-211330000	Weak transcription	Gastric	stomach
27	chr2:211301200-211340200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr2:211301200-211340600	Weak transcription	Fetal Intestine Small	intestine
29	chr2:211301200-211340800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr2:211301400-211318800	Weak transcription	Psoas Muscle	Psoas
31	chr2:211301400-211319000	Weak transcription	Fetal Kidney	kidney
32	chr2:211301400-211319200	Weak transcription	Thymus	Thymus
33	chr2:211301400-211330000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr2:211301400-211330800	Weak transcription	Right Ventricle	heart
35	chr2:211301400-211334400	Weak transcription	NHEK	skin
36	chr2:211301400-211336000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr2:211301800-211315800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr2:211301800-211318000	Weak transcription	Stomach Smooth Muscle	stomach
39	chr2:211302200-211319200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr2:211302600-211318400	Weak transcription	HMEC	breast
41	chr2:211302600-211319000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr2:211303000-211316600	Weak transcription	Placenta	Placenta
43	chr2:211303600-211319200	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr2:211303800-211319000	Weak transcription	NHLF	lung
45	chr2:211304200-211315800	Weak transcription	HSMM	muscle
46	chr2:211304200-211319400	Weak transcription	Hela-S3	cervix
47	chr2:211305200-211316200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr2:211305200-211318000	Weak transcription	NH-A	brain
49	chr2:211305400-211316800	Weak transcription	Liver	Liver
50	chr2:211305400-211317800	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links