Variant report

Variant	rs6727315
Chromosome Location	chr2:21672561-21672562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2194755	1.00[AMR][1000 genomes]
rs2338025	1.00[AMR][1000 genomes]
rs6732955	1.00[AMR][1000 genomes]
rs6735780	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6755947	1.00[AMR][1000 genomes]
rs73919298	1.00[AMR][1000 genomes]
rs7558043	0.89[AMR][1000 genomes]
rs7580908	1.00[AMR][1000 genomes]
rs7591576	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21646800-21690600	Weak transcription	Aorta	Aorta
2	chr2:21664800-21675200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:21670400-21675600	Weak transcription	Spleen	Spleen
4	chr2:21670800-21675600	Weak transcription	Ovary	ovary
5	chr2:21671200-21674000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr2:21671600-21675000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:21671800-21672600	Enhancers	Rectal Smooth Muscle	rectum
8	chr2:21672200-21673400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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