Variant report

Variant	rs73919298
Chromosome Location	chr2:21684566-21684567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs12622330	1.00[EUR][1000 genomes]
rs12624085	1.00[EUR][1000 genomes]
rs13423484	1.00[EUR][1000 genomes]
rs13423690	1.00[EUR][1000 genomes]
rs17042410	1.00[EUR][1000 genomes]
rs17042419	1.00[EUR][1000 genomes]
rs1963369	1.00[EUR][1000 genomes]
rs2194755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2194758	1.00[EUR][1000 genomes]
rs2196163	1.00[EUR][1000 genomes]
rs2338025	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55692320	1.00[EUR][1000 genomes]
rs55757500	1.00[EUR][1000 genomes]
rs55990751	1.00[EUR][1000 genomes]
rs56003985	1.00[EUR][1000 genomes]
rs56834904	1.00[EUR][1000 genomes]
rs58106116	1.00[EUR][1000 genomes]
rs58254111	1.00[EUR][1000 genomes]
rs58352420	1.00[EUR][1000 genomes]
rs59092457	1.00[EUR][1000 genomes]
rs6727315	1.00[AMR][1000 genomes]
rs6732955	1.00[AMR][1000 genomes]
rs6735780	1.00[AMR][1000 genomes]
rs6755947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73919233	1.00[EUR][1000 genomes]
rs73919234	1.00[EUR][1000 genomes]
rs73919235	1.00[EUR][1000 genomes]
rs73919237	1.00[EUR][1000 genomes]
rs73919239	1.00[EUR][1000 genomes]
rs73919240	1.00[EUR][1000 genomes]
rs73919241	1.00[EUR][1000 genomes]
rs73919242	1.00[EUR][1000 genomes]
rs73919243	1.00[EUR][1000 genomes]
rs73919244	1.00[EUR][1000 genomes]
rs73919245	1.00[EUR][1000 genomes]
rs73919246	1.00[EUR][1000 genomes]
rs73919247	1.00[EUR][1000 genomes]
rs73919248	1.00[EUR][1000 genomes]
rs73919249	1.00[EUR][1000 genomes]
rs73919254	1.00[EUR][1000 genomes]
rs73919256	1.00[EUR][1000 genomes]
rs73919257	1.00[EUR][1000 genomes]
rs73919259	1.00[EUR][1000 genomes]
rs73919262	1.00[EUR][1000 genomes]
rs73919284	1.00[EUR][1000 genomes]
rs73919287	1.00[EUR][1000 genomes]
rs73919291	1.00[EUR][1000 genomes]
rs73919294	1.00[EUR][1000 genomes]
rs73919302	1.00[EUR][1000 genomes]
rs73921205	1.00[EUR][1000 genomes]
rs73921206	1.00[EUR][1000 genomes]
rs73921209	1.00[EUR][1000 genomes]
rs7558043	0.89[AMR][1000 genomes]
rs7580908	1.00[AMR][1000 genomes]
rs7591576	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21646800-21690600	Weak transcription	Aorta	Aorta
2	chr2:21683800-21685400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:21684400-21684800	Active TSS	Stomach Smooth Muscle	stomach
4	chr2:21684400-21687200	Enhancers	Rectal Smooth Muscle	rectum

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