Variant report

Variant	rs17042419
Chromosome Location	chr2:21691346-21691347
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10490611	1.00[ASN][1000 genomes]
rs12622330	1.00[EUR][1000 genomes]
rs12624085	1.00[EUR][1000 genomes]
rs13423484	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13423690	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13428491	1.00[ASN][1000 genomes]
rs17042253	1.00[JPT][hapmap]
rs17042257	1.00[JPT][hapmap]
rs17042275	1.00[TSI][hapmap]
rs17042410	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1963369	1.00[EUR][1000 genomes]
rs2194755	1.00[EUR][1000 genomes]
rs2194757	1.00[ASN][1000 genomes]
rs2194758	1.00[EUR][1000 genomes]
rs2194759	1.00[ASN][1000 genomes]
rs2196163	1.00[EUR][1000 genomes]
rs2338025	1.00[EUR][1000 genomes]
rs55692320	1.00[EUR][1000 genomes]
rs55757500	1.00[EUR][1000 genomes]
rs55990751	1.00[EUR][1000 genomes]
rs56003985	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56834904	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58106116	1.00[EUR][1000 genomes]
rs58254111	1.00[EUR][1000 genomes]
rs58352420	1.00[EUR][1000 genomes]
rs59092457	1.00[EUR][1000 genomes]
rs6745563	0.85[JPT][hapmap]
rs6755947	1.00[EUR][1000 genomes]
rs73919233	1.00[EUR][1000 genomes]
rs73919234	1.00[EUR][1000 genomes]
rs73919235	1.00[EUR][1000 genomes]
rs73919237	1.00[EUR][1000 genomes]
rs73919239	1.00[EUR][1000 genomes]
rs73919240	1.00[EUR][1000 genomes]
rs73919241	1.00[EUR][1000 genomes]
rs73919242	1.00[EUR][1000 genomes]
rs73919243	1.00[EUR][1000 genomes]
rs73919244	1.00[EUR][1000 genomes]
rs73919245	1.00[EUR][1000 genomes]
rs73919246	1.00[EUR][1000 genomes]
rs73919247	1.00[EUR][1000 genomes]
rs73919248	1.00[EUR][1000 genomes]
rs73919249	1.00[EUR][1000 genomes]
rs73919254	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73919256	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73919257	1.00[EUR][1000 genomes]
rs73919259	1.00[EUR][1000 genomes]
rs73919262	1.00[EUR][1000 genomes]
rs73919284	1.00[EUR][1000 genomes]
rs73919287	1.00[EUR][1000 genomes]
rs73919291	1.00[EUR][1000 genomes]
rs73919294	1.00[EUR][1000 genomes]
rs73919298	1.00[EUR][1000 genomes]
rs73919302	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73921205	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73921206	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73921209	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21688600-21692800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr2:21688800-21692800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:21689400-21692600	Enhancers	Duodenum Smooth Muscle	Duodenum
4	chr2:21689800-21691600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr2:21690600-21691800	Enhancers	Aorta	Aorta
6	chr2:21690800-21692200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:21690800-21692200	Enhancers	Stomach Smooth Muscle	stomach
8	chr2:21691000-21691400	Enhancers	H1 Cell Line	embryonic stem cell

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