Variant report

Variant	rs10490611
Chromosome Location	chr2:21707203-21707204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13423484	1.00[ASN][1000 genomes]
rs13423690	1.00[ASN][1000 genomes]
rs13428491	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17042253	1.00[JPT][hapmap]
rs17042257	1.00[JPT][hapmap]
rs17042410	0.89[ASN][1000 genomes]
rs17042419	1.00[ASN][1000 genomes]
rs2194757	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2194759	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56003985	0.83[ASN][1000 genomes]
rs56834904	1.00[ASN][1000 genomes]
rs6745563	0.85[JPT][hapmap]
rs73919254	0.83[ASN][1000 genomes]
rs73919256	0.83[ASN][1000 genomes]
rs73919302	1.00[ASN][1000 genomes]
rs73921205	1.00[ASN][1000 genomes]
rs73921206	1.00[ASN][1000 genomes]
rs73921209	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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