Variant report

Variant	rs6745563
Chromosome Location	chr2:21723562-21723563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:41399286..41402556-chr2:21723206..21726226,5	K562	blood:
2	chr17:41466152..41467688-chr2:21723206..21724726,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188825	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10200683	0.92[ASN][1000 genomes]
rs10209178	0.80[AMR][1000 genomes]
rs10211154	0.80[AMR][1000 genomes]
rs10211567	0.80[AMR][1000 genomes]
rs11126835	0.80[AMR][1000 genomes]
rs11126863	0.80[AMR][1000 genomes]
rs13000075	0.80[AMR][1000 genomes]
rs13405168	1.00[ASN][1000 genomes]
rs13416424	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13427297	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1477471	0.80[AMR][1000 genomes]
rs1477472	0.80[AMR][1000 genomes]
rs17042253	0.85[JPT][hapmap]
rs17042257	0.85[JPT][hapmap]
rs1968279	0.80[AMR][1000 genomes]
rs1991127	0.85[ASN][1000 genomes]
rs1991128	0.92[ASN][1000 genomes]
rs2005912	0.85[ASN][1000 genomes]
rs2194557	0.85[ASN][1000 genomes]
rs2194558	0.92[ASN][1000 genomes]
rs2194559	0.92[ASN][1000 genomes]
rs2194567	0.80[AMR][1000 genomes]
rs2194571	0.92[ASN][1000 genomes]
rs2338369	0.85[ASN][1000 genomes]
rs28361438	0.92[ASN][1000 genomes]
rs4473414	0.80[AMR][1000 genomes]
rs4665367	0.80[AMR][1000 genomes]
rs4665368	0.80[AMR][1000 genomes]
rs56149559	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57208668	0.80[AMR][1000 genomes]
rs59932004	1.00[ASN][1000 genomes]
rs6547383	0.80[AMR][1000 genomes]
rs6547384	0.80[AMR][1000 genomes]
rs6547423	0.80[AMR][1000 genomes]
rs6547698	0.92[ASN][1000 genomes]
rs6547699	0.85[ASN][1000 genomes]
rs6547710	0.85[ASN][1000 genomes]
rs6729222	0.92[ASN][1000 genomes]
rs6738468	0.80[AMR][1000 genomes]
rs6743443	0.80[AMR][1000 genomes]
rs6744152	0.80[AMR][1000 genomes]
rs6747084	0.80[AMR][1000 genomes]
rs6747935	0.80[AMR][1000 genomes]
rs728109	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72892288	1.00[ASN][1000 genomes]
rs72892296	1.00[ASN][1000 genomes]
rs72894021	0.92[ASN][1000 genomes]
rs72894032	0.92[ASN][1000 genomes]
rs72894034	0.92[ASN][1000 genomes]
rs7563186	0.85[ASN][1000 genomes]
rs889961	0.85[ASN][1000 genomes]
rs889962	0.85[ASN][1000 genomes]
rs970125	0.80[AMR][1000 genomes]
rs970126	0.80[AMR][1000 genomes]
rs979038	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21713200-21726600	Weak transcription	Aorta	Aorta
2	chr2:21723200-21725800	Enhancers	Colon Smooth Muscle	Colon
3	chr2:21723400-21725400	Enhancers	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links