Variant report
Variant | rs72894021 |
---|---|
Chromosome Location | chr2:21759630-21759631 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10200683 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs11126823 | 0.82[AMR][1000 genomes] |
rs13397909 | 0.82[AMR][1000 genomes] |
rs13405168 | 0.92[ASN][1000 genomes] |
rs13416424 | 0.92[ASN][1000 genomes] |
rs13422674 | 0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs13427297 | 0.92[ASN][1000 genomes] |
rs1991127 | 0.93[ASN][1000 genomes] |
rs1991128 | 1.00[ASN][1000 genomes] |
rs2005912 | 0.93[ASN][1000 genomes] |
rs2042523 | 0.82[AMR][1000 genomes] |
rs2194557 | 0.93[ASN][1000 genomes] |
rs2194558 | 1.00[ASN][1000 genomes] |
rs2194559 | 1.00[ASN][1000 genomes] |
rs2194571 | 1.00[ASN][1000 genomes] |
rs2288150 | 0.82[AMR][1000 genomes] |
rs2288151 | 0.82[AMR][1000 genomes] |
rs2338369 | 0.93[ASN][1000 genomes] |
rs28361438 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs4665369 | 0.82[AMR][1000 genomes] |
rs56149559 | 0.92[ASN][1000 genomes] |
rs59932004 | 0.92[ASN][1000 genomes] |
rs6547698 | 1.00[ASN][1000 genomes] |
rs6547699 | 0.93[ASN][1000 genomes] |
rs6547710 | 0.93[ASN][1000 genomes] |
rs6729222 | 1.00[ASN][1000 genomes] |
rs6745563 | 0.92[ASN][1000 genomes] |
rs728109 | 0.92[ASN][1000 genomes] |
rs72892288 | 0.92[ASN][1000 genomes] |
rs72892296 | 0.92[ASN][1000 genomes] |
rs72894032 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs72894034 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs7563186 | 0.93[ASN][1000 genomes] |
rs7575945 | 0.82[AMR][1000 genomes] |
rs889961 | 0.93[ASN][1000 genomes] |
rs889962 | 0.93[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1011486 | chr2:21475803-22364002 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
2 | nsv535602 | chr2:21475803-22364002 | Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:21757600-21760600 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
2 | chr2:21758400-21759800 | ZNF genes & repeats | Liver | Liver |