Variant report

Variant	rs28361438
Chromosome Location	chr2:21814985-21814986
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10200683	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10209178	0.90[AMR][1000 genomes]
rs10211154	0.90[AMR][1000 genomes]
rs10211567	0.90[AMR][1000 genomes]
rs11126823	0.81[AMR][1000 genomes]
rs11126835	0.90[AMR][1000 genomes]
rs11126863	0.90[AMR][1000 genomes]
rs13000075	0.90[AMR][1000 genomes]
rs13397909	0.81[AMR][1000 genomes]
rs13405168	0.92[ASN][1000 genomes]
rs13416424	0.92[ASN][1000 genomes]
rs13422674	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13427297	0.92[ASN][1000 genomes]
rs1477471	0.90[AMR][1000 genomes]
rs1477472	0.90[AMR][1000 genomes]
rs1968279	0.90[AMR][1000 genomes]
rs1991127	0.93[ASN][1000 genomes]
rs1991128	1.00[ASN][1000 genomes]
rs2005912	0.93[ASN][1000 genomes]
rs2042523	0.81[AMR][1000 genomes]
rs2194557	0.93[ASN][1000 genomes]
rs2194558	1.00[ASN][1000 genomes]
rs2194559	1.00[ASN][1000 genomes]
rs2194567	0.90[AMR][1000 genomes]
rs2194571	1.00[ASN][1000 genomes]
rs2288150	0.81[AMR][1000 genomes]
rs2288151	0.81[AMR][1000 genomes]
rs2338369	0.93[ASN][1000 genomes]
rs4473414	0.90[AMR][1000 genomes]
rs4665367	0.90[AMR][1000 genomes]
rs4665368	0.90[AMR][1000 genomes]
rs4665369	0.81[AMR][1000 genomes]
rs56149559	0.92[ASN][1000 genomes]
rs57208668	0.90[AMR][1000 genomes]
rs59932004	0.92[ASN][1000 genomes]
rs6547383	0.90[AMR][1000 genomes]
rs6547384	0.90[AMR][1000 genomes]
rs6547423	0.90[AMR][1000 genomes]
rs6547698	1.00[ASN][1000 genomes]
rs6547699	0.93[ASN][1000 genomes]
rs6547710	0.93[ASN][1000 genomes]
rs6729222	1.00[ASN][1000 genomes]
rs6738468	0.90[AMR][1000 genomes]
rs6743443	0.90[AMR][1000 genomes]
rs6744152	0.90[AMR][1000 genomes]
rs6745563	0.92[ASN][1000 genomes]
rs6747084	0.90[AMR][1000 genomes]
rs6747935	0.90[AMR][1000 genomes]
rs728109	0.92[ASN][1000 genomes]
rs72892288	0.92[ASN][1000 genomes]
rs72892296	0.92[ASN][1000 genomes]
rs72894021	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72894032	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72894034	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7563186	0.93[ASN][1000 genomes]
rs7575945	0.81[AMR][1000 genomes]
rs889961	0.93[ASN][1000 genomes]
rs889962	0.93[ASN][1000 genomes]
rs970125	0.90[AMR][1000 genomes]
rs970126	0.90[AMR][1000 genomes]
rs979038	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3406784	chr2:21805088-22160765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21812600-21815400	Enhancers	Fetal Lung	lung
2	chr2:21813000-21815400	Enhancers	Fetal Brain Female	brain
3	chr2:21813800-21815000	Weak transcription	Brain Germinal Matrix	brain
4	chr2:21814200-21815200	Enhancers	Ovary	ovary
5	chr2:21814600-21815000	Enhancers	Fetal Brain Male	brain

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