Variant report
| Variant | rs728109 |
|---|---|
| Chromosome Location | chr2:21713523-21713524 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-APOB-13 | chr2:21712646-21714915 | l_1791_chr2:21684027-21724125_testes |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10200683 | 0.92[ASN][1000 genomes] |
| rs13405168 | 1.00[ASN][1000 genomes] |
| rs13416424 | 0.93[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13427297 | 0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17042253 | 0.85[JPT][hapmap] |
| rs17042257 | 0.85[JPT][hapmap] |
| rs1991127 | 0.85[ASN][1000 genomes] |
| rs1991128 | 0.92[ASN][1000 genomes] |
| rs2005912 | 0.85[ASN][1000 genomes] |
| rs2194557 | 0.85[ASN][1000 genomes] |
| rs2194558 | 0.92[ASN][1000 genomes] |
| rs2194559 | 0.92[ASN][1000 genomes] |
| rs2194571 | 0.92[ASN][1000 genomes] |
| rs2338369 | 0.85[ASN][1000 genomes] |
| rs28361438 | 0.92[ASN][1000 genomes] |
| rs56149559 | 0.94[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59932004 | 1.00[ASN][1000 genomes] |
| rs6547698 | 0.92[ASN][1000 genomes] |
| rs6547699 | 0.85[ASN][1000 genomes] |
| rs6547710 | 0.85[ASN][1000 genomes] |
| rs6729222 | 0.92[ASN][1000 genomes] |
| rs6745563 | 1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72892288 | 1.00[ASN][1000 genomes] |
| rs72892296 | 1.00[ASN][1000 genomes] |
| rs72894021 | 0.92[ASN][1000 genomes] |
| rs72894032 | 0.92[ASN][1000 genomes] |
| rs72894034 | 0.92[ASN][1000 genomes] |
| rs7563186 | 0.85[ASN][1000 genomes] |
| rs889961 | 0.85[ASN][1000 genomes] |
| rs889962 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011486 | chr2:21475803-22364002 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv535602 | chr2:21475803-22364002 | Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:21713200-21726600 | Weak transcription | Aorta | Aorta |
