Variant report

Variant	rs73919233
Chromosome Location	chr2:21611529-21611530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:21609330..21611613-chr2:21622342..21624204,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs12622330	1.00[EUR][1000 genomes]
rs12624085	1.00[EUR][1000 genomes]
rs13423484	1.00[EUR][1000 genomes]
rs13423690	1.00[EUR][1000 genomes]
rs17042410	1.00[EUR][1000 genomes]
rs17042419	1.00[EUR][1000 genomes]
rs1963369	1.00[EUR][1000 genomes]
rs2194755	1.00[EUR][1000 genomes]
rs2194758	1.00[EUR][1000 genomes]
rs2196163	1.00[EUR][1000 genomes]
rs2338025	1.00[EUR][1000 genomes]
rs55692320	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55757500	1.00[EUR][1000 genomes]
rs55990751	1.00[EUR][1000 genomes]
rs56003985	1.00[EUR][1000 genomes]
rs56834904	1.00[EUR][1000 genomes]
rs58106116	1.00[EUR][1000 genomes]
rs58254111	1.00[EUR][1000 genomes]
rs58352420	1.00[EUR][1000 genomes]
rs59092457	1.00[EUR][1000 genomes]
rs6755947	1.00[EUR][1000 genomes]
rs73919234	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73919235	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73919237	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73919239	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73919240	1.00[EUR][1000 genomes]
rs73919241	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73919242	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73919243	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73919244	1.00[EUR][1000 genomes]
rs73919245	1.00[EUR][1000 genomes]
rs73919246	1.00[EUR][1000 genomes]
rs73919247	1.00[EUR][1000 genomes]
rs73919248	1.00[EUR][1000 genomes]
rs73919249	1.00[EUR][1000 genomes]
rs73919254	1.00[EUR][1000 genomes]
rs73919256	1.00[EUR][1000 genomes]
rs73919257	1.00[EUR][1000 genomes]
rs73919259	1.00[EUR][1000 genomes]
rs73919262	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73919284	1.00[EUR][1000 genomes]
rs73919287	1.00[EUR][1000 genomes]
rs73919291	1.00[EUR][1000 genomes]
rs73919294	1.00[EUR][1000 genomes]
rs73919298	1.00[EUR][1000 genomes]
rs73919302	1.00[EUR][1000 genomes]
rs73921205	1.00[EUR][1000 genomes]
rs73921206	1.00[EUR][1000 genomes]
rs73921209	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv455863	chr2:21547003-21615340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv581170	chr2:21547003-21615340	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv2631	chr2:21606995-21652014	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
6	esv11873	chr2:21611318-21612150	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21582000-21634600	Weak transcription	Aorta	Aorta
2	chr2:21611200-21611800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:21611400-21611600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:21611400-21611600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:21611400-21611600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin

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