Variant report

Variant	rs73919262
Chromosome Location	chr2:21668178-21668179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:23339522..23342253-chr2:21666341..21668692,2	K562	blood:

Variant related genes	Relation type
ENSG00000197324	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs12622330	1.00[EUR][1000 genomes]
rs12624085	1.00[EUR][1000 genomes]
rs13423484	1.00[EUR][1000 genomes]
rs13423690	1.00[EUR][1000 genomes]
rs17042410	1.00[EUR][1000 genomes]
rs17042419	1.00[EUR][1000 genomes]
rs1963369	1.00[EUR][1000 genomes]
rs2194755	1.00[EUR][1000 genomes]
rs2194758	1.00[EUR][1000 genomes]
rs2196163	1.00[EUR][1000 genomes]
rs2338025	1.00[EUR][1000 genomes]
rs55692320	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55757500	1.00[EUR][1000 genomes]
rs55990751	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56003985	1.00[EUR][1000 genomes]
rs56834904	1.00[EUR][1000 genomes]
rs58106116	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58254111	1.00[EUR][1000 genomes]
rs58352420	1.00[EUR][1000 genomes]
rs59092457	1.00[EUR][1000 genomes]
rs6755947	1.00[EUR][1000 genomes]
rs73919233	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73919234	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73919235	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73919237	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73919239	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73919240	1.00[EUR][1000 genomes]
rs73919241	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73919242	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73919243	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73919244	1.00[EUR][1000 genomes]
rs73919245	1.00[EUR][1000 genomes]
rs73919246	1.00[EUR][1000 genomes]
rs73919247	1.00[EUR][1000 genomes]
rs73919248	1.00[EUR][1000 genomes]
rs73919249	1.00[EUR][1000 genomes]
rs73919254	1.00[EUR][1000 genomes]
rs73919256	1.00[EUR][1000 genomes]
rs73919257	1.00[EUR][1000 genomes]
rs73919259	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73919284	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73919287	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73919291	1.00[EUR][1000 genomes]
rs73919294	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73919298	1.00[EUR][1000 genomes]
rs73919302	1.00[EUR][1000 genomes]
rs73921205	1.00[EUR][1000 genomes]
rs73921206	1.00[EUR][1000 genomes]
rs73921209	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21646800-21690600	Weak transcription	Aorta	Aorta
2	chr2:21664800-21675200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:21667000-21668600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr2:21667000-21671600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:21667400-21669200	Weak transcription	Ovary	ovary
6	chr2:21667400-21671800	Weak transcription	Rectal Smooth Muscle	rectum

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