Variant report
| Variant | rs6727428 |
|---|---|
| Chromosome Location | chr2:187334086-187334087 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000065548 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10177972 | 1.00[AMR][1000 genomes] |
| rs10188241 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12463482 | 1.00[AMR][1000 genomes] |
| rs1349155 | 1.00[AMR][1000 genomes] |
| rs1349156 | 1.00[AMR][1000 genomes] |
| rs1375320 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1442432 | 1.00[AMR][1000 genomes] |
| rs1448853 | 1.00[AMR][1000 genomes] |
| rs1448864 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1451879 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1823298 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1992931 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2084487 | 1.00[AMR][1000 genomes] |
| rs4667096 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59395554 | 1.00[AMR][1000 genomes] |
| rs60816826 | 1.00[AMR][1000 genomes] |
| rs61318824 | 1.00[AMR][1000 genomes] |
| rs62196179 | 1.00[AMR][1000 genomes] |
| rs6434178 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6723903 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6740754 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6741234 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6759051 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73979110 | 1.00[AMR][1000 genomes] |
| rs73979115 | 1.00[AMR][1000 genomes] |
| rs73979116 | 1.00[AMR][1000 genomes] |
| rs73979131 | 1.00[AMR][1000 genomes] |
| rs73979138 | 1.00[AMR][1000 genomes] |
| rs73979143 | 1.00[AMR][1000 genomes] |
| rs73979161 | 1.00[AMR][1000 genomes] |
| rs73979174 | 1.00[AMR][1000 genomes] |
| rs73979189 | 1.00[AMR][1000 genomes] |
| rs7558856 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs967425 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428067 | chr2:187171324-187334779 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | esv2757844 | chr2:187332780-187580547 | Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 3 | esv2759107 | chr2:187332780-187580547 | Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:187320600-187347400 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
| 2 | chr2:187322600-187345400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 3 | chr2:187328000-187350400 | Weak transcription | Pancreas | Pancrea |
