Variant report

Variant	rs1375320
Chromosome Location	chr2:187249545-187249546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZSWIM2-3	chr2:187249030-187249978	NONHSAT075981

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10164481	0.90[AFR][1000 genomes]
rs10177972	1.00[AMR][1000 genomes]
rs10188241	1.00[AMR][1000 genomes]
rs12463482	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1349155	1.00[AMR][1000 genomes]
rs1349156	1.00[AMR][1000 genomes]
rs1442432	1.00[AMR][1000 genomes]
rs1448853	1.00[AMR][1000 genomes]
rs1448864	1.00[AMR][1000 genomes]
rs1451879	1.00[AMR][1000 genomes]
rs1823298	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1992931	1.00[AMR][1000 genomes]
rs2084487	1.00[AMR][1000 genomes]
rs4667096	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55745344	1.00[AMR][1000 genomes]
rs59395554	1.00[AMR][1000 genomes]
rs59528603	1.00[AMR][1000 genomes]
rs59701674	1.00[AMR][1000 genomes]
rs60816826	1.00[AMR][1000 genomes]
rs61318824	1.00[AMR][1000 genomes]
rs6434178	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6723903	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6727428	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6740754	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6741234	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6759051	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979110	1.00[AMR][1000 genomes]
rs73979115	1.00[AMR][1000 genomes]
rs73979116	1.00[AMR][1000 genomes]
rs73979131	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979138	1.00[AMR][1000 genomes]
rs73979143	1.00[AMR][1000 genomes]
rs73979161	1.00[AMR][1000 genomes]
rs73979174	1.00[AMR][1000 genomes]
rs73979189	1.00[AMR][1000 genomes]
rs73980876	1.00[AMR][1000 genomes]
rs73980888	1.00[AMR][1000 genomes]
rs73980898	1.00[AMR][1000 genomes]
rs7558856	1.00[AMR][1000 genomes]
rs967425	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875545	chr2:186566024-187280164	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv868949	chr2:186657142-187327560	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv932296	chr2:186737443-187265790	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1006411	chr2:187150025-187291081	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv536079	chr2:187150025-187291081	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv428067	chr2:187171324-187334779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv961744	chr2:187189976-187265519	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv3071	chr2:187208040-187252682	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv963887	chr2:187239111-187253365	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1005680	chr2:187244500-187320653	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv536080	chr2:187244500-187320653	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187244200-187250400	Weak transcription	Pancreas	Pancrea
2	chr2:187244200-187256000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:187246800-187249800	Weak transcription	Fetal Intestine Small	intestine
4	chr2:187249400-187249600	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links