Variant report

Variant	rs73980898
Chromosome Location	chr2:187094688-187094689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10177972	1.00[AMR][1000 genomes]
rs10188241	1.00[AMR][1000 genomes]
rs1021278	1.00[AMR][1000 genomes]
rs10931220	1.00[AMR][1000 genomes]
rs12463482	1.00[AMR][1000 genomes]
rs12618557	1.00[AMR][1000 genomes]
rs1349155	1.00[AMR][1000 genomes]
rs1349156	1.00[AMR][1000 genomes]
rs1375320	1.00[AMR][1000 genomes]
rs1448853	1.00[AMR][1000 genomes]
rs1448864	1.00[AMR][1000 genomes]
rs1823298	1.00[AMR][1000 genomes]
rs1992931	1.00[AMR][1000 genomes]
rs2084487	1.00[AMR][1000 genomes]
rs2370480	1.00[AMR][1000 genomes]
rs4667096	1.00[AMR][1000 genomes]
rs55745344	1.00[AMR][1000 genomes]
rs58477403	1.00[AMR][1000 genomes]
rs59528603	1.00[AMR][1000 genomes]
rs59701674	1.00[AMR][1000 genomes]
rs61318824	1.00[AMR][1000 genomes]
rs6434178	1.00[AMR][1000 genomes]
rs6723903	1.00[AMR][1000 genomes]
rs6740754	1.00[AMR][1000 genomes]
rs6741234	1.00[AMR][1000 genomes]
rs6759051	1.00[AMR][1000 genomes]
rs7355315	1.00[AMR][1000 genomes]
rs73978958	1.00[AMR][1000 genomes]
rs73979110	1.00[AMR][1000 genomes]
rs73979115	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979116	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979131	1.00[AMR][1000 genomes]
rs73979138	1.00[AMR][1000 genomes]
rs73979143	1.00[AMR][1000 genomes]
rs73979161	1.00[AMR][1000 genomes]
rs73979174	1.00[AMR][1000 genomes]
rs73979269	1.00[AMR][1000 genomes]
rs73980876	1.00[AMR][1000 genomes]
rs73980888	1.00[AMR][1000 genomes]
rs7564153	1.00[AMR][1000 genomes]
rs7571468	1.00[AMR][1000 genomes]
rs901614	1.00[AMR][1000 genomes]
rs967425	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875545	chr2:186566024-187280164	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv817325	chr2:186625679-187200841	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv868949	chr2:186657142-187327560	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1002243	chr2:186692815-187150225	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv536077	chr2:186692815-187150225	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv932296	chr2:186737443-187265790	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv875548	chr2:186798249-187164657	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1003369	chr2:186980675-187133740	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1014726	chr2:187036909-187213113	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv536078	chr2:187036909-187213113	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187091800-187105400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:187093400-187094800	ZNF genes & repeats	Liver	Liver
3	chr2:187093400-187095000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:187093400-187095200	ZNF genes & repeats	Ovary	ovary
5	chr2:187093600-187094800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:187093600-187095200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
7	chr2:187093600-187095600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:187093600-187095600	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr2:187094000-187095000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
10	chr2:187094000-187095200	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
11	chr2:187094000-187095600	ZNF genes & repeats	Adipose Nuclei	Adipose
12	chr2:187094200-187095000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
13	chr2:187094200-187095600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
14	chr2:187094400-187094800	ZNF genes & repeats	Gastric	stomach
15	chr2:187094400-187094800	ZNF genes & repeats	Left Ventricle	heart
16	chr2:187094400-187095000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr2:187094400-187095000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr2:187094400-187095000	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr2:187094400-187095000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr2:187094400-187095000	ZNF genes & repeats	Pancreas	Pancrea
21	chr2:187094400-187095200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
22	chr2:187094400-187095400	ZNF genes & repeats	Aorta	Aorta
23	chr2:187094400-187095600	ZNF genes & repeats	Fetal Stomach	stomach

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