Variant report

Variant	rs6727545
Chromosome Location	chr2:183570239-183570240
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:183569800..183572698-chr2:183572719..183574437,2	MCF-7	breast:
2	chr2:183569888..183574492-chr2:183579294..183583506,5	MCF-7	breast:
3	chr2:183568184..183572232-chr2:183575375..183579342,4	K562	blood:
4	chr2:183570034..183572518-chr2:183580411..183582264,3	K562	blood:

Variant related genes	Relation type
ENSG00000077232	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11695731	0.84[ASN][1000 genomes]
rs11901549	0.87[EUR][1000 genomes]
rs13509	0.85[EUR][1000 genomes]
rs167013	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs184078	0.85[EUR][1000 genomes]
rs190830	0.82[EUR][1000 genomes]
rs192618	0.84[EUR][1000 genomes]
rs208393	0.82[EUR][1000 genomes]
rs288239	0.85[EUR][1000 genomes]
rs288240	0.82[EUR][1000 genomes]
rs288241	0.85[EUR][1000 genomes]
rs288253	0.86[EUR][1000 genomes]
rs288254	0.86[EUR][1000 genomes]
rs288256	0.86[EUR][1000 genomes]
rs288257	0.86[EUR][1000 genomes]
rs288258	0.84[EUR][1000 genomes]
rs288259	0.86[EUR][1000 genomes]
rs288260	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs288263	0.83[EUR][1000 genomes]
rs288264	0.87[EUR][1000 genomes]
rs288265	0.86[EUR][1000 genomes]
rs288267	0.91[EUR][1000 genomes]
rs288268	0.91[EUR][1000 genomes]
rs288269	0.91[EUR][1000 genomes]
rs288278	0.83[EUR][1000 genomes]
rs288280	0.83[EUR][1000 genomes]
rs288283	0.83[EUR][1000 genomes]
rs288285	0.85[EUR][1000 genomes]
rs288287	0.84[EUR][1000 genomes]
rs288291	0.87[EUR][1000 genomes]
rs288292	0.86[EUR][1000 genomes]
rs288293	0.86[EUR][1000 genomes]
rs288294	0.84[EUR][1000 genomes]
rs288295	0.82[EUR][1000 genomes]
rs288296	0.83[EUR][1000 genomes]
rs288299	0.81[EUR][1000 genomes]
rs288300	0.84[EUR][1000 genomes]
rs288302	0.80[EUR][1000 genomes]
rs288303	0.82[EUR][1000 genomes]
rs288304	0.85[EUR][1000 genomes]
rs288305	0.82[EUR][1000 genomes]
rs288306	0.85[EUR][1000 genomes]
rs288307	0.82[EUR][1000 genomes]
rs288308	0.82[EUR][1000 genomes]
rs288309	0.82[EUR][1000 genomes]
rs288310	0.82[EUR][1000 genomes]
rs288311	0.83[EUR][1000 genomes]
rs288312	0.86[EUR][1000 genomes]
rs288313	0.84[EUR][1000 genomes]
rs288331	0.84[EUR][1000 genomes]
rs288332	0.81[EUR][1000 genomes]
rs288334	0.82[EUR][1000 genomes]
rs288335	0.84[EUR][1000 genomes]
rs288336	0.82[EUR][1000 genomes]
rs3115425	0.84[EUR][1000 genomes]
rs369573	0.84[EUR][1000 genomes]
rs409343	0.83[EUR][1000 genomes]
rs418159	0.86[EUR][1000 genomes]
rs432527	0.85[EUR][1000 genomes]
rs438248	0.86[EUR][1000 genomes]
rs442044	0.85[EUR][1000 genomes]
rs73975514	0.83[EUR][1000 genomes]
rs7588247	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs825660	0.84[EUR][1000 genomes]
rs825668	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2757842	chr2:183437700-183835084	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2759104	chr2:183437700-183835084	Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv875481	chr2:183508696-183579698	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv875482	chr2:183508696-183582170	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv459957	chr2:183509337-183571049	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv583917	chr2:183509337-183571049	Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv999184	chr2:183511698-183571054	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv536069	chr2:183511698-183571054	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv583918	chr2:183512335-183572496	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv2756954	chr2:183528670-183764930	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
12	nsv875483	chr2:183537399-183657867	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
13	esv34847	chr2:183537399-183786763	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
14	esv3693445	chr2:183542825-183725221	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6727545	DNAJC10	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183569000-183571000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr2:183569400-183571000	Enhancers	Primary hematopoietic stem cells	blood
3	chr2:183569400-183571000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr2:183569600-183571000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:183570000-183570600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr2:183570200-183570600	Enhancers	Monocytes-CD14+_RO01746	blood

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