Variant report

Variant	rs67278720
Chromosome Location	chr15:57162659-57162660
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:57161808..57163920-chr15:57199692..57202077,2	K562	blood:
2	chr15:57161863..57163537-chr15:57180536..57183003,2	K562	blood:
3	chr15:57156279..57158494-chr15:57161338..57162998,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1012321	0.83[EUR][1000 genomes]
rs10450961	0.81[EUR][1000 genomes]
rs11855646	0.85[EUR][1000 genomes]
rs11858368	0.82[EUR][1000 genomes]
rs13379960	0.84[EUR][1000 genomes]
rs1430819	0.83[EUR][1000 genomes]
rs1441236	0.86[EUR][1000 genomes]
rs1647392	0.84[EUR][1000 genomes]
rs1660961	0.82[EUR][1000 genomes]
rs1967353	0.84[EUR][1000 genomes]
rs2161933	0.85[EUR][1000 genomes]
rs2163369	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2414487	0.84[EUR][1000 genomes]
rs28371400	0.83[EUR][1000 genomes]
rs28468978	0.83[EUR][1000 genomes]
rs28568712	0.84[EUR][1000 genomes]
rs28609621	0.84[EUR][1000 genomes]
rs28736360	0.84[EUR][1000 genomes]
rs28874022	0.86[EUR][1000 genomes]
rs4313751	0.83[EUR][1000 genomes]
rs56965085	0.84[EUR][1000 genomes]
rs6493893	0.82[EUR][1000 genomes]
rs6493894	0.85[EUR][1000 genomes]
rs67114210	0.87[EUR][1000 genomes]
rs67622899	0.84[EUR][1000 genomes]
rs68083905	0.87[EUR][1000 genomes]
rs7163302	0.83[EUR][1000 genomes]
rs7167847	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72747165	0.83[EUR][1000 genomes]
rs8026149	0.84[EUR][1000 genomes]
rs8040866	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8042606	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	esv3401951	chr15:57151709-57176189	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57135400-57164000	Weak transcription	Aorta	Aorta
2	chr15:57140000-57164600	Weak transcription	Pancreas	Pancrea
3	chr15:57154200-57163400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:57159600-57163000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:57159600-57163200	Weak transcription	NH-A	brain
6	chr15:57159800-57163800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr15:57160800-57163400	Weak transcription	Colon Smooth Muscle	Colon
8	chr15:57160800-57164000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr15:57162000-57163600	Weak transcription	Brain Substantia Nigra	brain
10	chr15:57162200-57163400	Weak transcription	Brain Anterior Caudate	brain
11	chr15:57162200-57163400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr15:57162200-57178400	Weak transcription	Thymus	Thymus
13	chr15:57162600-57163200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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