Variant report

Variant	rs11858368
Chromosome Location	chr15:57149637-57149638
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57148424..57150051-chr15:57159772..57162482,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1012321	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10450961	0.85[EUR][1000 genomes]
rs10851612	0.84[TSI][hapmap]
rs1115019	0.88[CEU][hapmap];0.92[TSI][hapmap]
rs11855646	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12324092	0.94[GIH][hapmap];0.83[TSI][hapmap]
rs13379960	0.88[EUR][1000 genomes]
rs1430819	0.87[EUR][1000 genomes]
rs1441236	0.94[CEU][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs1647392	0.94[CEU][hapmap];0.89[CHB][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs1657922	0.88[CEU][hapmap];0.85[TSI][hapmap]
rs1657934	0.88[CEU][hapmap];0.89[CHB][hapmap];0.89[TSI][hapmap]
rs1660961	0.96[EUR][1000 genomes]
rs1967352	0.81[EUR][1000 genomes]
rs1967353	0.81[EUR][1000 genomes]
rs2161933	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2163369	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2278613	0.82[CEU][hapmap]
rs2414487	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28371400	0.82[EUR][1000 genomes]
rs28468978	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28568712	0.88[EUR][1000 genomes]
rs28609621	0.88[EUR][1000 genomes]
rs28736360	0.88[EUR][1000 genomes]
rs28874022	0.90[EUR][1000 genomes]
rs4313751	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56965085	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6493893	0.94[CEU][hapmap];0.89[CHB][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes]
rs6493894	0.89[EUR][1000 genomes]
rs67114210	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67278720	0.82[EUR][1000 genomes]
rs67622899	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68083905	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7163302	0.87[EUR][1000 genomes]
rs7175191	0.88[CEU][hapmap];0.92[TSI][hapmap]
rs7176873	0.83[TSI][hapmap]
rs7178196	0.86[AMR][1000 genomes]
rs72747165	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7359253	0.88[CEU][hapmap];0.89[CHB][hapmap];0.86[TSI][hapmap]
rs8026149	0.86[EUR][1000 genomes]
rs8040866	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8042606	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9302200	0.83[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11858368	TCF12	Cis_1M	lymphoblastoid	RTeQTL
rs11858368	MAPK6	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57128200-57158600	Weak transcription	Ovary	ovary
2	chr15:57135400-57164000	Weak transcription	Aorta	Aorta
3	chr15:57138600-57161800	Weak transcription	Fetal Thymus	thymus
4	chr15:57140000-57164600	Weak transcription	Pancreas	Pancrea
5	chr15:57149400-57150200	Flanking Active TSS	A549	lung

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