Variant report

Variant	rs1115019
Chromosome Location	chr15:57141231-57141232
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57137325..57139764-chr15:57139933..57143948,3	K562	blood:

Variant related genes	Relation type
ENSG00000225625	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10851612	0.91[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1158246	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1430820	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1430822	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs1441235	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1441236	0.94[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1612205	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1629339	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1647378	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1647385	0.94[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1647392	0.94[CEU][hapmap];0.80[TSI][hapmap]
rs1652744	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1652746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1652747	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1652748	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1657922	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.92[TSI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1657927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1657930	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1657934	1.00[CEU][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1657935	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1657936	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1657937	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1657938	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1657939	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1660948	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1660950	0.85[AMR][1000 genomes]
rs1660951	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1660958	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1660961	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1660963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1660964	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16977153	0.87[CHB][hapmap]
rs17415731	0.86[CHB][hapmap]
rs2278613	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28371400	0.82[ASN][1000 genomes]
rs28874022	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4774245	0.87[CHB][hapmap]
rs4774893	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4774895	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6493893	0.94[CEU][hapmap];0.89[TSI][hapmap]
rs7162194	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs7164655	0.83[CHB][hapmap]
rs7175191	0.91[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs7178833	0.83[CHB][hapmap]
rs7359253	1.00[CEU][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8023343	0.85[CHB][hapmap];0.85[GIH][hapmap]
rs8031640	0.82[JPT][hapmap]
rs8032615	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs8034066	0.86[CHB][hapmap]
rs8035485	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs8039899	0.82[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1115019	TNFAIP8L3	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57128200-57158600	Weak transcription	Ovary	ovary
2	chr15:57129400-57142600	Weak transcription	Fetal Muscle Leg	muscle
3	chr15:57135400-57164000	Weak transcription	Aorta	Aorta
4	chr15:57137200-57145600	Weak transcription	Fetal Intestine Small	intestine
5	chr15:57137400-57142200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:57138600-57161800	Weak transcription	Fetal Thymus	thymus
7	chr15:57139600-57149600	Weak transcription	Left Ventricle	heart
8	chr15:57140000-57164600	Weak transcription	Pancreas	Pancrea

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