Variant report

Variant	rs1660948
Chromosome Location	chr15:57121646-57121647
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1012321	0.81[ASN][1000 genomes]
rs10450961	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10518878	0.82[ASN][1000 genomes]
rs10851612	0.83[EUR][1000 genomes]
rs1115019	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13379960	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1430819	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1441235	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1612205	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1629339	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1647378	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1647385	0.85[AMR][1000 genomes]
rs1647392	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1652744	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1652746	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1652747	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1652748	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1657922	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1657927	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1657930	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1657934	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1657935	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1657936	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1657937	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1657938	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1657939	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1660950	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1660951	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1660963	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1660964	0.88[AMR][1000 genomes]
rs1967352	0.85[ASN][1000 genomes]
rs1967353	0.84[ASN][1000 genomes]
rs2161933	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2278613	0.83[EUR][1000 genomes]
rs28568712	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28609621	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28736360	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4313751	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4774893	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4774895	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56965085	0.80[ASN][1000 genomes]
rs6493893	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6493894	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67114210	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68083905	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7163302	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7359253	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8026149	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8042606	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57110000-57138600	Weak transcription	Left Ventricle	heart
2	chr15:57113000-57130400	Weak transcription	Thymus	Thymus
3	chr15:57114400-57123800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr15:57114600-57123600	Weak transcription	Colon Smooth Muscle	Colon
5	chr15:57114600-57123800	Weak transcription	Brain Hippocampus Middle	brain
6	chr15:57114600-57124200	Weak transcription	Fetal Stomach	stomach
7	chr15:57114600-57124400	Weak transcription	Fetal Thymus	thymus
8	chr15:57117000-57129000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:57117600-57124400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr15:57121600-57122600	Enhancers	Brain Germinal Matrix	brain

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