Variant report

Variant	rs1660964
Chromosome Location	chr15:57158987-57158988
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10851612	0.91[ASW][hapmap];0.91[GIH][hapmap];0.87[TSI][hapmap];0.85[ASN][1000 genomes]
rs1115019	1.00[ASW][hapmap];0.89[CEU][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1158246	0.85[ASN][1000 genomes]
rs1441235	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1441236	0.83[CEU][hapmap];0.87[TSI][hapmap];0.93[ASN][1000 genomes]
rs1612205	0.88[AMR][1000 genomes]
rs1629339	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1647378	0.85[AMR][1000 genomes]
rs1647385	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1647392	0.83[CEU][hapmap]
rs1652744	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1652746	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1652747	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1652748	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1657922	1.00[ASW][hapmap];0.89[CEU][hapmap];0.91[GIH][hapmap];0.90[LWK][hapmap];0.92[MEX][hapmap];0.85[MKK][hapmap];0.87[TSI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1657927	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1657930	0.86[AMR][1000 genomes]
rs1657934	0.89[CEU][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.89[AMR][1000 genomes]
rs1657935	0.88[AMR][1000 genomes]
rs1657936	0.88[AMR][1000 genomes]
rs1657937	0.86[AMR][1000 genomes]
rs1657938	0.89[AMR][1000 genomes]
rs1657939	0.89[AMR][1000 genomes]
rs1660948	0.88[AMR][1000 genomes]
rs1660950	0.85[AMR][1000 genomes]
rs1660951	0.89[AMR][1000 genomes]
rs1660958	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1660961	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1660963	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278613	0.83[CEU][hapmap];0.85[ASN][1000 genomes]
rs28371400	0.85[ASN][1000 genomes]
rs28874022	0.93[ASN][1000 genomes]
rs4774893	0.89[AMR][1000 genomes]
rs4774895	0.89[AMR][1000 genomes]
rs6493893	0.83[CEU][hapmap];0.84[TSI][hapmap]
rs7175191	0.91[ASW][hapmap];0.82[ASN][1000 genomes]
rs7359253	0.89[CEU][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes]
rs8023343	0.83[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	esv3401951	chr15:57151709-57176189	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57135400-57164000	Weak transcription	Aorta	Aorta
2	chr15:57138600-57161800	Weak transcription	Fetal Thymus	thymus
3	chr15:57140000-57164600	Weak transcription	Pancreas	Pancrea
4	chr15:57154200-57163400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr15:57158400-57159800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr15:57158600-57159400	Enhancers	Ovary	ovary
7	chr15:57158800-57159400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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