Variant report

Variant	rs1657930
Chromosome Location	chr15:57120989-57120990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10450961	0.80[EUR][1000 genomes]
rs10518878	0.81[ASN][1000 genomes]
rs10851612	0.88[CEU][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs1115019	1.00[CEU][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13379960	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1430819	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1441235	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1441236	0.94[CEU][hapmap];0.89[TSI][hapmap]
rs1612205	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1629339	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1647378	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1647385	0.83[AMR][1000 genomes]
rs1647392	1.00[ASW][hapmap];0.94[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.84[JPT][hapmap];0.89[MKK][hapmap];0.83[TSI][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1652744	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1652746	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1652747	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1652748	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1657922	1.00[CEU][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1657927	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1657934	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];0.88[LWK][hapmap];0.96[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1657935	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1657936	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1657937	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1657938	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1657939	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1660948	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1660950	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1660951	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1660963	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1660964	0.86[AMR][1000 genomes]
rs1967352	0.83[ASN][1000 genomes]
rs1967353	0.81[ASN][1000 genomes]
rs2161933	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2278613	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs28568712	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28609621	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28736360	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4313751	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4774893	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4774895	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6493893	1.00[ASW][hapmap];0.94[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.84[JPT][hapmap];0.88[LWK][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6493894	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67114210	0.92[ASN][1000 genomes]
rs68083905	0.83[ASN][1000 genomes]
rs7163302	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7175191	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs7359253	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];0.88[LWK][hapmap];0.96[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8026149	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57110000-57138600	Weak transcription	Left Ventricle	heart
2	chr15:57113000-57130400	Weak transcription	Thymus	Thymus
3	chr15:57114400-57123800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr15:57114600-57121600	Weak transcription	Brain Germinal Matrix	brain
5	chr15:57114600-57123600	Weak transcription	Colon Smooth Muscle	Colon
6	chr15:57114600-57123800	Weak transcription	Brain Hippocampus Middle	brain
7	chr15:57114600-57124200	Weak transcription	Fetal Stomach	stomach
8	chr15:57114600-57124400	Weak transcription	Fetal Thymus	thymus
9	chr15:57117000-57129000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:57117600-57124400	Weak transcription	Fetal Muscle Trunk	muscle

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