Variant report

Variant	rs10851612
Chromosome Location	chr15:57181212-57181213
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:57176057..57187872-chr15:57206946..57217524,36	K562	blood:
2	chr15:57178056..57181492-chr15:57182204..57185235,4	MCF-7	breast:
3	chr15:57179828..57184056-chr15:57314164..57317264,3	K562	blood:
4	chr15:57161863..57163537-chr15:57180536..57183003,2	K562	blood:
5	chr15:57178290..57182491-chr15:57208958..57213003,14	K562	blood:
6	chr15:57178055..57182351-chr15:57208260..57213543,21	MCF-7	breast:
7	chr15:57179564..57182313-chr15:57232225..57234178,2	K562	blood:
8	chr15:57179607..57181296-chr15:57182021..57184256,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000140262	Chromatin interaction
ENSG00000137871	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1115019	0.91[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1158246	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11855646	0.80[EUR][1000 genomes]
rs11856411	0.87[CHB][hapmap]
rs1430820	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1430822	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs1441235	0.87[EUR][1000 genomes]
rs1441236	0.82[CEU][hapmap];0.95[CHB][hapmap];0.82[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.80[ASN][1000 genomes]
rs1612205	0.81[EUR][1000 genomes]
rs1629339	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1647392	0.82[CEU][hapmap]
rs1652744	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1652746	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1652747	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1652748	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1657922	0.91[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1657927	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1657930	0.82[EUR][1000 genomes]
rs1657934	0.88[CEU][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs1657935	0.83[EUR][1000 genomes]
rs1657936	0.83[EUR][1000 genomes]
rs1657937	0.83[EUR][1000 genomes]
rs1657938	0.83[EUR][1000 genomes]
rs1657939	0.81[EUR][1000 genomes]
rs1660948	0.83[EUR][1000 genomes]
rs1660951	0.83[EUR][1000 genomes]
rs1660958	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1660963	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1660964	0.85[ASN][1000 genomes]
rs16977153	0.82[CHB][hapmap]
rs17415731	0.91[CHB][hapmap]
rs2278613	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2414487	0.80[EUR][1000 genomes]
rs28371400	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28874022	0.80[ASN][1000 genomes]
rs4774245	0.82[CHB][hapmap]
rs4774895	0.80[EUR][1000 genomes]
rs6493893	0.82[CEU][hapmap];0.81[TSI][hapmap]
rs6493900	0.87[CHB][hapmap]
rs7162194	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs7163267	0.87[CHB][hapmap]
rs7164655	0.87[CHB][hapmap]
rs7171073	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs7175191	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.86[TSI][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7176873	0.82[JPT][hapmap]
rs7178833	0.87[CHB][hapmap]
rs7359253	0.88[CEU][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes]
rs8023343	0.90[GIH][hapmap]
rs8031640	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs8032615	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs8034066	0.86[CHB][hapmap]
rs8035485	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs8039899	0.86[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10851612	TNFAIP8L3	cis	cerebellum	SCAN

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57180200-57185000	Weak transcription	Left Ventricle	heart
2	chr15:57180200-57208000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr15:57180400-57181400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:57180400-57181400	Weak transcription	Brain Angular Gyrus	brain
5	chr15:57180400-57181600	Enhancers	Primary hematopoietic stem cells	blood
6	chr15:57180400-57181600	Enhancers	Adipose Nuclei	Adipose
7	chr15:57180400-57181600	Enhancers	Fetal Intestine Large	intestine
8	chr15:57180400-57184400	Weak transcription	HSMMtube	muscle
9	chr15:57180400-57184800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr15:57180400-57185000	Weak transcription	Psoas Muscle	Psoas
11	chr15:57180400-57196000	Weak transcription	Fetal Brain Female	brain
12	chr15:57180600-57181400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr15:57180600-57181800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr15:57180600-57181800	Enhancers	Fetal Thymus	thymus
15	chr15:57180600-57182600	Weak transcription	Colon Smooth Muscle	Colon
16	chr15:57180600-57183000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr15:57180600-57183800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:57180600-57184800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr15:57180800-57181400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:57180800-57181400	Enhancers	Dnd41	blood
21	chr15:57180800-57182800	Weak transcription	Placenta	Placenta
22	chr15:57180800-57184200	Weak transcription	Fetal Muscle Leg	muscle
23	chr15:57181000-57181400	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr15:57181000-57181400	Enhancers	Fetal Lung	lung
25	chr15:57181000-57181400	Enhancers	HepG2	liver
26	chr15:57181000-57181600	Weak transcription	Fetal Stomach	stomach
27	chr15:57181000-57181600	Enhancers	Hela-S3	cervix
28	chr15:57181000-57181600	Enhancers	K562	blood
29	chr15:57181000-57183200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr15:57181000-57184800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr15:57181000-57185200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr15:57181000-57185800	Weak transcription	Brain Anterior Caudate	brain
33	chr15:57181000-57190800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr15:57181000-57191400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr15:57181200-57181600	Enhancers	Thymus	Thymus
36	chr15:57181200-57181800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr15:57181200-57183000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr15:57181200-57183000	Weak transcription	Fetal Intestine Small	intestine
39	chr15:57181200-57183800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr15:57181200-57184000	Weak transcription	Fetal Heart	heart
41	chr15:57181200-57185600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr15:57181200-57192600	Weak transcription	Brain Hippocampus Middle	brain

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