Variant report

Variant	rs1660958
Chromosome Location	chr15:57184307-57184308
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:57178056..57181492-chr15:57182204..57185235,4	MCF-7	breast:
2	chr15:57176057..57187872-chr15:57206946..57217524,36	K562	blood:
3	chr15:57184246..57187569-chr15:57209016..57212206,5	K562	blood:

Variant related genes	Relation type
ENSG00000137871	Chromatin interaction
ENSG00000140262	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10851612	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1115019	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1158246	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1441235	0.82[EUR][1000 genomes]
rs1441236	0.84[ASN][1000 genomes]
rs1629339	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1647385	0.83[AMR][1000 genomes]
rs1652744	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1652746	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1652747	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1652748	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1657922	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1657927	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1660963	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1660964	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs16977153	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1820994	0.81[ASN][1000 genomes]
rs2278613	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28371400	0.96[ASN][1000 genomes]
rs28874022	0.84[ASN][1000 genomes]
rs4774245	0.80[ASN][1000 genomes]
rs7175191	0.93[ASN][1000 genomes]
rs8023343	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57180200-57185000	Weak transcription	Left Ventricle	heart
2	chr15:57180200-57208000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr15:57180400-57184400	Weak transcription	HSMMtube	muscle
4	chr15:57180400-57184800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr15:57180400-57185000	Weak transcription	Psoas Muscle	Psoas
6	chr15:57180400-57196000	Weak transcription	Fetal Brain Female	brain
7	chr15:57180600-57184800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr15:57181000-57184800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr15:57181000-57185200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr15:57181000-57185800	Weak transcription	Brain Anterior Caudate	brain
11	chr15:57181000-57190800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr15:57181000-57191400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:57181200-57185600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr15:57181200-57192600	Weak transcription	Brain Hippocampus Middle	brain
15	chr15:57181600-57204000	Weak transcription	Thymus	Thymus
16	chr15:57182000-57209200	Weak transcription	Fetal Stomach	stomach
17	chr15:57182600-57204200	Weak transcription	Fetal Thymus	thymus
18	chr15:57184000-57185200	Enhancers	Fetal Heart	heart
19	chr15:57184200-57184400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
20	chr15:57184200-57185000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
21	chr15:57184200-57186000	Enhancers	Fetal Muscle Leg	muscle

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