Variant report

Variant	rs1158246
Chromosome Location	chr15:57185969-57185970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10851612	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1115019	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1441236	0.80[ASN][1000 genomes]
rs1629339	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1652744	0.85[ASN][1000 genomes]
rs1652746	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1652747	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1652748	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1657922	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1657927	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1660958	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1660963	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1660964	0.85[ASN][1000 genomes]
rs2278613	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28371400	1.00[ASN][1000 genomes]
rs28874022	0.80[ASN][1000 genomes]
rs7175191	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57180200-57208000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr15:57180400-57196000	Weak transcription	Fetal Brain Female	brain
3	chr15:57181000-57190800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr15:57181000-57191400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr15:57181200-57192600	Weak transcription	Brain Hippocampus Middle	brain
6	chr15:57181600-57204000	Weak transcription	Thymus	Thymus
7	chr15:57182000-57209200	Weak transcription	Fetal Stomach	stomach
8	chr15:57182600-57204200	Weak transcription	Fetal Thymus	thymus
9	chr15:57184200-57186000	Enhancers	Fetal Muscle Leg	muscle
10	chr15:57184400-57186000	Enhancers	HSMMtube	muscle
11	chr15:57184800-57186000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr15:57184800-57186000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr15:57185000-57186000	Enhancers	Left Ventricle	heart
14	chr15:57185200-57186000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr15:57185600-57186200	Enhancers	Fetal Heart	heart
16	chr15:57185800-57186000	Enhancers	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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