Variant report

Variant	rs1657927
Chromosome Location	chr15:57139631-57139632
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10851612	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1115019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1158246	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13379960	0.80[EUR][1000 genomes]
rs1441235	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1441236	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1612205	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1629339	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1647378	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1647385	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1652744	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1652746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1652747	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1652748	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1657922	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1657930	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1657934	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1657935	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1657936	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1657937	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1657938	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1657939	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1660948	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1660950	0.85[AMR][1000 genomes]
rs1660951	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1660958	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1660961	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1660963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1660964	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2278613	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28371400	0.80[ASN][1000 genomes]
rs28568712	0.80[EUR][1000 genomes]
rs28609621	0.80[EUR][1000 genomes]
rs28736360	0.80[EUR][1000 genomes]
rs28874022	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4774893	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4774895	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7359253	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57125400-57140400	Weak transcription	Brain Angular Gyrus	brain
2	chr15:57125400-57141000	Weak transcription	Fetal Lung	lung
3	chr15:57125400-57141000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr15:57128200-57140400	Weak transcription	Brain Anterior Caudate	brain
5	chr15:57128200-57158600	Weak transcription	Ovary	ovary
6	chr15:57128400-57140000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:57128400-57140400	Weak transcription	Right Ventricle	heart
8	chr15:57129400-57142600	Weak transcription	Fetal Muscle Leg	muscle
9	chr15:57131000-57141000	Weak transcription	Adipose Nuclei	Adipose
10	chr15:57135400-57164000	Weak transcription	Aorta	Aorta
11	chr15:57137200-57145600	Weak transcription	Fetal Intestine Small	intestine
12	chr15:57137400-57142200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:57138000-57140400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr15:57138600-57141200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr15:57138600-57161800	Weak transcription	Fetal Thymus	thymus
16	chr15:57139600-57140000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr15:57139600-57149600	Weak transcription	Left Ventricle	heart

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