Variant report

Variant	rs4774895
Chromosome Location	chr15:57106245-57106246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:57099808..57101939-chr15:57104483..57106305,2	K562	blood:
2	chr15:57104304..57106504-chr15:57107525..57109423,2	MCF-7	breast:
3	chr15:57106197..57110196-chr15:57111997..57118015,6	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10518878	0.89[ASN][1000 genomes]
rs10851612	0.80[EUR][1000 genomes]
rs1115019	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13379960	0.81[EUR][1000 genomes]
rs1430819	0.81[EUR][1000 genomes]
rs1441235	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1612205	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1629339	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1647378	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1647385	0.86[AMR][1000 genomes]
rs1647392	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1652744	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1652746	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1652747	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1652748	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1657922	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1657927	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1657930	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1657934	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1657935	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1657936	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1657937	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1657938	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1657939	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1660948	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1660950	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1660951	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1660963	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1660964	0.89[AMR][1000 genomes]
rs16977079	0.82[ASN][1000 genomes]
rs1967352	0.80[ASN][1000 genomes]
rs2161933	0.91[ASN][1000 genomes]
rs2278613	0.80[EUR][1000 genomes]
rs28568712	0.81[EUR][1000 genomes]
rs28609621	0.81[EUR][1000 genomes]
rs28736360	0.81[EUR][1000 genomes]
rs4313751	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4774893	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56965085	0.88[ASN][1000 genomes]
rs6493893	0.99[ASN][1000 genomes]
rs67114210	0.87[ASN][1000 genomes]
rs68083905	0.94[ASN][1000 genomes]
rs7163302	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7166876	0.87[ASN][1000 genomes]
rs7178196	0.82[ASN][1000 genomes]
rs7182691	0.86[ASN][1000 genomes]
rs7359253	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8026149	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8042606	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57100200-57114000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr15:57100400-57111600	Weak transcription	Thymus	Thymus
3	chr15:57102200-57109200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:57102600-57109800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:57104000-57107400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr15:57104600-57106400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr15:57104600-57108400	Weak transcription	Right Ventricle	heart
8	chr15:57104600-57109200	Weak transcription	Aorta	Aorta
9	chr15:57104800-57110600	Enhancers	HUVEC	blood vessel
10	chr15:57105000-57108400	Weak transcription	Left Ventricle	heart
11	chr15:57105000-57109000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr15:57105000-57114000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:57105000-57114200	Weak transcription	Ovary	ovary
14	chr15:57105200-57106600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:57105200-57109000	Weak transcription	Fetal Lung	lung
16	chr15:57105400-57106600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:57105400-57109800	Weak transcription	Fetal Heart	heart
18	chr15:57105600-57106600	Enhancers	Adipose Nuclei	Adipose
19	chr15:57105800-57106600	Enhancers	NHDF-Ad	bronchial
20	chr15:57105800-57107000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr15:57106000-57106400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr15:57106000-57106600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:57106000-57106600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr15:57106000-57106600	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr15:57106200-57106600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:57106200-57106600	Enhancers	Psoas Muscle	Psoas
27	chr15:57106200-57106600	Enhancers	Right Atrium	heart
28	chr15:57106200-57107400	Enhancers	Fetal Thymus	thymus

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