Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57069903..57072539-chr15:57074133..57076126,2	K562	blood:
2	chr15:57059367..57061157-chr15:57069753..57071946,3	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10518878	0.91[ASN][1000 genomes]
rs1647378	0.81[ASN][1000 genomes]
rs1647392	0.89[CHB][hapmap];0.84[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1657934	0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1657935	0.83[ASN][1000 genomes]
rs1657936	0.83[ASN][1000 genomes]
rs1657937	0.83[ASN][1000 genomes]
rs1657938	0.83[ASN][1000 genomes]
rs1657939	0.83[ASN][1000 genomes]
rs1660951	0.83[ASN][1000 genomes]
rs4774893	0.82[ASN][1000 genomes]
rs4774895	0.82[ASN][1000 genomes]
rs6493882	0.81[GIH][hapmap];0.87[MEX][hapmap]
rs6493886	0.84[CEU][hapmap];0.84[GIH][hapmap];0.85[JPT][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.82[ASN][1000 genomes]
rs6493893	0.89[CHB][hapmap];0.91[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.80[TSI][hapmap];0.83[ASN][1000 genomes]
rs7164095	0.83[GIH][hapmap];0.86[MEX][hapmap]
rs7166876	0.92[ASN][1000 genomes]
rs7178196	0.86[ASN][1000 genomes]
rs7182691	0.84[ASN][1000 genomes]
rs7359253	0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs8026149	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs16977079	CCPG1	cis	cerebellum	SCAN
rs16977079	TEX9	cis	parietal	SCAN
rs16977079	TCF12	cis	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57066400-57070600	Weak transcription	Liver	Liver
2	chr15:57068200-57072200	Weak transcription	Primary B cells from peripheral blood	blood

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