Variant report

Variant	rs7164095
Chromosome Location	chr15:57002275-57002276
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57000713..57002937-chr15:57007883..57010798,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10518871	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11852822	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11856432	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16977020	0.80[CHB][hapmap];0.82[GIH][hapmap]
rs2128171	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28437201	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3784553	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap];0.91[ASN][1000 genomes]
rs59066195	0.89[ASN][1000 genomes]
rs6493882	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6493886	0.94[CEU][hapmap];0.81[CHD][hapmap];0.84[GIH][hapmap];0.85[MEX][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs7165211	0.80[ASN][1000 genomes]
rs7171500	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7172110	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7173137	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7175191	0.81[CEU][hapmap]
rs7181745	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7164095	TEX9	cis	parietal	SCAN
rs7164095	TCF12	cis	lymphoblastoid	seeQTL

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56919800-57016600	Weak transcription	Small Intestine	intestine
2	chr15:56958400-57019200	Weak transcription	Fetal Intestine Small	intestine
3	chr15:56971000-57023400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:56988800-57008400	Weak transcription	Fetal Heart	heart
5	chr15:56992400-57008400	Weak transcription	K562	blood
6	chr15:56992400-57010800	Weak transcription	Spleen	Spleen
7	chr15:56992400-57021800	Weak transcription	Right Ventricle	heart
8	chr15:56992600-57022600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:56993000-57016000	Weak transcription	Pancreas	Pancrea
10	chr15:56993000-57024000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:56993200-57002400	Weak transcription	NHEK	skin
12	chr15:56993200-57007200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr15:56993200-57008200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr15:56993200-57010800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr15:56993200-57010800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr15:56993200-57011600	Weak transcription	HMEC	breast
17	chr15:56993400-57021600	Weak transcription	Fetal Brain Male	brain
18	chr15:56994000-57023800	Weak transcription	Fetal Kidney	kidney
19	chr15:56995800-57016000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr15:56995800-57022200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr15:56996000-57004600	Weak transcription	Esophagus	oesophagus
22	chr15:56996000-57005400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:56996000-57008000	Weak transcription	Brain Angular Gyrus	brain
24	chr15:56996000-57009200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr15:56996000-57010800	Weak transcription	Brain Anterior Caudate	brain
26	chr15:56996000-57011000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr15:56996000-57011400	Weak transcription	Aorta	Aorta
28	chr15:56996000-57013000	Weak transcription	Ovary	ovary
29	chr15:56996000-57021800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr15:56996400-57007600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr15:56996400-57015800	Weak transcription	Fetal Intestine Large	intestine
32	chr15:56996400-57021600	Weak transcription	HSMMtube	muscle
33	chr15:56996400-57022600	Weak transcription	NH-A	brain
34	chr15:56996600-57011000	Weak transcription	Dnd41	blood
35	chr15:56996800-57022600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr15:56997000-57003800	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr15:56997000-57016000	Weak transcription	HSMM	muscle
38	chr15:56997200-57002400	Weak transcription	Thymus	Thymus
39	chr15:56997200-57003400	Weak transcription	HUVEC	blood vessel
40	chr15:56997200-57015800	Weak transcription	Liver	Liver
41	chr15:56997200-57016400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr15:56997200-57016600	Weak transcription	Left Ventricle	heart
43	chr15:56997200-57022800	Weak transcription	Gastric	stomach
44	chr15:56997200-57023800	Weak transcription	Fetal Stomach	stomach
45	chr15:56997400-57010800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr15:56997400-57012400	Weak transcription	NHLF	lung
47	chr15:56997600-57011800	Weak transcription	NHDF-Ad	bronchial
48	chr15:56998000-57016000	Weak transcription	Fetal Lung	lung
49	chr15:56998400-57002800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr15:56998400-57004400	Weak transcription	Adipose Nuclei	Adipose

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