Variant report

Variant	rs28437201
Chromosome Location	chr15:57049810-57049811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10518871	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10518878	0.86[EUR][1000 genomes]
rs11071290	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11852822	0.83[EUR][1000 genomes]
rs11856432	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6493882	0.85[EUR][1000 genomes]
rs6493886	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6493892	0.89[EUR][1000 genomes]
rs7164095	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7166876	0.89[EUR][1000 genomes]
rs7173137	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7178196	0.88[EUR][1000 genomes]
rs7182691	0.87[EUR][1000 genomes]
rs9919955	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57042600-57051000	Weak transcription	Adipose Nuclei	Adipose
2	chr15:57047400-57051000	Weak transcription	Aorta	Aorta
3	chr15:57047800-57050200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:57047800-57050200	Weak transcription	Osteobl	bone
5	chr15:57047800-57050400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr15:57048000-57050600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:57048200-57050600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:57048800-57050400	Weak transcription	NHDF-Ad	bronchial
9	chr15:57049600-57051400	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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