Variant report

Variant	rs9919955
Chromosome Location	chr15:57083831-57083832
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10450961	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10518878	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11856432	0.82[EUR][1000 genomes]
rs13379960	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1430819	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1441236	0.82[EUR][1000 genomes]
rs1647392	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1967353	0.83[EUR][1000 genomes]
rs2161933	0.83[EUR][1000 genomes]
rs28437201	0.84[EUR][1000 genomes]
rs28568712	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28609621	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28736360	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28874022	0.82[EUR][1000 genomes]
rs4313751	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56965085	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6493892	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6493893	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6493894	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67114210	0.88[EUR][1000 genomes]
rs68083905	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7163302	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7166876	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7173137	0.81[EUR][1000 genomes]
rs7178196	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7182691	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72747165	0.80[EUR][1000 genomes]
rs8026149	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8042606	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9919955	TCF12	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57073000-57086200	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links