Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57045367..57048338-chr15:57051654..57053416,2	K562	blood:
2	chr15:57039206..57041236-chr15:57044908..57046817,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10518871	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10518878	0.84[EUR][1000 genomes]
rs11071290	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11638707	0.81[CHB][hapmap]
rs11852822	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11856558	0.81[CHB][hapmap]
rs11857706	0.81[CHB][hapmap]
rs12898521	0.81[CHB][hapmap]
rs12903283	0.81[CHB][hapmap]
rs12905514	0.81[CHB][hapmap]
rs1424694	0.81[CHB][hapmap]
rs17238845	0.81[CHB][hapmap]
rs2128171	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28437201	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28620278	0.81[CHB][hapmap]
rs3784553	0.81[CHB][hapmap]
rs4774244	0.81[CHB][hapmap]
rs553421	0.81[CHB][hapmap]
rs6493882	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6493886	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6493892	0.86[EUR][1000 genomes]
rs7164095	0.80[CHB][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7166876	0.86[EUR][1000 genomes]
rs7171500	0.83[ASN][1000 genomes]
rs7172110	0.83[CHB][hapmap]
rs7173137	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7178196	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7182691	0.84[EUR][1000 genomes]
rs8043223	0.81[CHB][hapmap]
rs9919955	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57042600-57051000	Weak transcription	Adipose Nuclei	Adipose
2	chr15:57042800-57046600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr15:57042800-57046600	Weak transcription	Osteobl	bone
4	chr15:57043200-57046800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:57044800-57047000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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