Variant report

Variant	rs7181745
Chromosome Location	chr15:56971305-56971306
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10518871	0.87[ASN][1000 genomes]
rs11852822	0.89[ASN][1000 genomes]
rs16977020	0.86[EUR][1000 genomes]
rs2046213	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2128171	0.89[ASN][1000 genomes]
rs3784553	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59066195	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6493882	0.87[ASN][1000 genomes]
rs7164095	0.93[ASN][1000 genomes]
rs7165211	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7171500	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7172110	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7179781	0.86[EUR][1000 genomes]
rs72744938	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7181745	TCF12	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56916600-56990800	Weak transcription	Pancreas	Pancrea
2	chr15:56917800-56990600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:56917800-56990600	Weak transcription	NHLF	lung
4	chr15:56919800-57016600	Weak transcription	Small Intestine	intestine
5	chr15:56924000-56990600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:56924000-56990800	Weak transcription	NHEK	skin
7	chr15:56928400-56996800	Weak transcription	Gastric	stomach
8	chr15:56937400-57000200	Weak transcription	Colonic Mucosa	Colon
9	chr15:56939200-56990800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:56939400-56986000	Weak transcription	Brain Substantia Nigra	brain
11	chr15:56945800-56990800	Weak transcription	Fetal Brain Male	brain
12	chr15:56946000-56990800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr15:56946200-56990800	Weak transcription	Right Ventricle	heart
14	chr15:56955800-56990600	Weak transcription	Esophagus	oesophagus
15	chr15:56956000-56973400	Weak transcription	Aorta	Aorta
16	chr15:56957400-56975600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr15:56958000-56990200	Weak transcription	A549	lung
18	chr15:56958200-56990200	Weak transcription	Fetal Muscle Leg	muscle
19	chr15:56958400-56972000	Weak transcription	Ovary	ovary
20	chr15:56958400-56990600	Weak transcription	Lung	lung
21	chr15:56958400-56990800	Weak transcription	Brain Germinal Matrix	brain
22	chr15:56958400-57019200	Weak transcription	Fetal Intestine Small	intestine
23	chr15:56958600-56972200	Weak transcription	Fetal Kidney	kidney
24	chr15:56958600-56990600	Weak transcription	Fetal Muscle Trunk	muscle
25	chr15:56959000-56971400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr15:56959200-56990400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr15:56959200-56990600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr15:56959200-56990600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:56959200-56990600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr15:56959200-56992000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr15:56959400-56986000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr15:56960800-56992000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr15:56961200-56990600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr15:56961200-56992200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr15:56962400-56971400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr15:56965200-56973600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr15:56965600-56990800	Weak transcription	K562	blood
38	chr15:56966800-56973600	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr15:56967000-56971800	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr15:56967000-56990800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr15:56967200-56971800	Strong transcription	NHDF-Ad	bronchial
42	chr15:56967600-56990600	Weak transcription	Left Ventricle	heart
43	chr15:56967800-56971800	Strong transcription	HSMM	muscle
44	chr15:56968200-56976000	Weak transcription	Colon Smooth Muscle	Colon
45	chr15:56968400-56990600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr15:56968400-56992000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr15:56968400-56992000	Weak transcription	HSMMtube	muscle
48	chr15:56968600-56990000	Weak transcription	NH-A	brain
49	chr15:56968800-56976000	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr15:56968800-56976000	Weak transcription	Fetal Heart	heart

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