Variant report

Variant rs672887
Chromosome Location chr19:20848117-20848118
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:20844600-20848200 Weak transcription Left Ventricle heart
2 chr19:20845000-20848800 ZNF genes & repeats Fetal Intestine Small intestine
3 chr19:20846800-20848600 Enhancers Fetal Intestine Large intestine
4 chr19:20847000-20848200 Enhancers Primary B cells from peripheral blood blood
5 chr19:20847200-20848200 Enhancers Pancreas Pancrea
6 chr19:20847600-20848400 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
7 chr19:20847600-20848400 Enhancers HUES64 Cell Line embryonic stem cell
8 chr19:20847600-20848400 Flanking Active TSS Skeletal Muscle Female skeletal muscle
9 chr19:20847600-20848600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr19:20847600-20848600 Active TSS Stomach Smooth Muscle stomach
11 chr19:20847600-20849000 Enhancers Placenta Placenta
12 chr19:20847800-20848200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
13 chr19:20847800-20848200 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
14 chr19:20847800-20848200 Enhancers Cortex derived primary cultured neurospheres brain
15 chr19:20847800-20848200 Flanking Active TSS Brain Germinal Matrix brain
16 chr19:20847800-20848200 Flanking Active TSS Brain Inferior Temporal Lobe brain
17 chr19:20847800-20848200 ZNF genes & repeats Colonic Mucosa Colon
18 chr19:20847800-20848200 Active TSS Colon Smooth Muscle Colon
19 chr19:20847800-20848200 Bivalent Enhancer Fetal Muscle Trunk muscle
20 chr19:20847800-20848200 Enhancers Gastric stomach
21 chr19:20847800-20848200 Enhancers K562 blood
22 chr19:20847800-20848400 Enhancers H1 Cell Line embryonic stem cell
23 chr19:20847800-20848400 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr19:20847800-20848400 Enhancers HUES6 Cell Line embryonic stem cell
25 chr19:20847800-20848400 ZNF genes & repeats IMR90 fetal lung fibroblasts Cell Line lung
26 chr19:20847800-20848400 Enhancers iPS-15b Cell Line embryonic stem cell
27 chr19:20847800-20848400 Flanking Active TSS Adipose Nuclei Adipose
28 chr19:20847800-20848400 Flanking Active TSS Brain Cingulate Gyrus brain
29 chr19:20847800-20848400 Enhancers Fetal Heart heart
30 chr19:20847800-20848400 Enhancers Fetal Lung lung
31 chr19:20847800-20848400 Enhancers Rectal Smooth Muscle rectum
32 chr19:20847800-20848400 Flanking Active TSS Skeletal Muscle Male skeletal muscle
33 chr19:20847800-20848600 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
34 chr19:20847800-20848600 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
35 chr19:20847800-20848600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
36 chr19:20847800-20848600 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr19:20847800-20848600 Active TSS Duodenum Smooth Muscle Duodenum
38 chr19:20847800-20848600 Enhancers Fetal Adrenal Gland Adrenal Gland
39 chr19:20847800-20848600 Enhancers Fetal Stomach stomach
40 chr19:20847800-20848800 Active TSS Psoas Muscle Psoas
41 chr19:20847800-20848800 Active TSS Right Ventricle heart
42 chr19:20848000-20848200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr19:20848000-20848200 Active TSS Brain Angular Gyrus brain
44 chr19:20848000-20848200 Enhancers Fetal Brain Male brain
45 chr19:20848000-20848400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
46 chr19:20848000-20848400 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
47 chr19:20848000-20848400 Flanking Active TSS HepG2 liver
48 chr19:20848000-20848400 Active TSS Osteobl bone
49 chr19:20848000-20848600 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
50 chr19:20848000-20848600 Active TSS Breast Myoepithelial Primary Cells Breast

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