Variant report

Variant	rs67305834
Chromosome Location	chr11:57831450-57831451
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:57594227..57596364-chr11:57829897..57831561,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11605988	0.84[AFR][1000 genomes]
rs11606464	0.84[AFR][1000 genomes]
rs11607308	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12790525	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12805812	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1376489	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1814059	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34300518	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3862656	0.87[AMR][1000 genomes]
rs4509781	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61902775	0.89[AMR][1000 genomes]
rs61902797	0.87[AMR][1000 genomes]
rs61902798	0.84[AMR][1000 genomes]
rs61902799	0.85[AMR][1000 genomes]
rs61904009	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61904011	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61904024	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7113760	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7930102	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7934149	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7934184	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7938062	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7945154	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7948507	0.81[EUR][1000 genomes]
rs7949119	0.81[EUR][1000 genomes]
rs7949558	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv832165	chr11:57806024-58009076	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57826400-57838000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:57826400-57845200	Weak transcription	Pancreas	Pancrea
3	chr11:57828600-57835200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:57829400-57833400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:57830000-57831600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:57830000-57831800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:57830000-57831800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:57830000-57835000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:57830000-57836400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:57830400-57831800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:57830400-57832400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:57830600-57832000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:57830600-57834200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:57830600-57835000	Weak transcription	NHEK	skin
15	chr11:57831200-57834400	Enhancers	HepG2	liver
16	chr11:57831400-57832800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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