Variant report

Variant	rs7945154
Chromosome Location	chr11:57912638-57912639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1031234	0.87[CEU][hapmap]
rs10896701	0.83[CEU][hapmap]
rs11229264	0.81[EUR][1000 genomes]
rs1155858	1.00[CHB][hapmap]
rs11600060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11601841	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11604473	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap]
rs11604630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12283722	0.81[EUR][1000 genomes]
rs12788387	0.90[CEU][hapmap]
rs12790525	0.90[CEU][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes]
rs12804808	0.88[CHB][hapmap]
rs12805812	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1376489	0.90[CEU][hapmap];0.89[JPT][hapmap]
rs17152364	0.91[CEU][hapmap]
rs17152376	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs17553949	0.87[YRI][hapmap]
rs1814059	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1868881	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs36104388	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3853676	0.95[CEU][hapmap]
rs3862656	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4509781	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56298140	0.82[EUR][1000 genomes]
rs61902775	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61902797	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61902798	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61902799	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61904024	0.87[AMR][1000 genomes]
rs67305834	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7113760	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7120102	0.94[CEU][hapmap]
rs7120442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7130381	0.82[EUR][1000 genomes]
rs7930102	0.90[CEU][hapmap];0.89[JPT][hapmap]
rs7934149	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7934184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7935428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7938062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7948507	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7949119	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7949558	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs895660	0.83[CEU][hapmap]
rs921445	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs930703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv832165	chr11:57806024-58009076	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv832166	chr11:57852031-58006189	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv832167	chr11:57912509-57948750	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57911200-57912800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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