Variant report

Variant	rs7120102
Chromosome Location	chr11:57868130-57868131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1031234	0.81[CEU][hapmap]
rs1155858	1.00[JPT][hapmap]
rs11600060	0.95[CEU][hapmap]
rs11601841	0.94[CEU][hapmap]
rs11604473	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs11604630	0.95[CEU][hapmap]
rs11607308	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12788387	0.80[CEU][hapmap];0.82[JPT][hapmap]
rs12790525	0.84[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12804808	1.00[JPT][hapmap]
rs12805812	0.94[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1376489	0.84[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17152364	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs17152376	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs1814059	0.94[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1868881	0.80[CEU][hapmap]
rs34300518	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36104388	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3853676	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs3862656	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4509781	0.89[CEU][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61902775	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61902797	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61902798	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61902799	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61904009	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61904011	0.84[AMR][1000 genomes]
rs61904024	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67305834	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7113760	0.89[CEU][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7120442	0.94[CEU][hapmap]
rs7930102	0.84[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7934149	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7934184	0.94[CEU][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7935428	0.94[CEU][hapmap]
rs7938062	0.94[CEU][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7945154	0.94[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7948507	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7949119	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7949558	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs930703	0.94[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv832165	chr11:57806024-58009076	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv523101	chr11:57843506-57871866	Enhancers Weak transcription	TF binding region	2 gene(s)	inside rSNPs	diseases
7	nsv832166	chr11:57852031-58006189	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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