Variant report

Variant	rs67306515
Chromosome Location	chr14:46790902-46790903
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10137074	1.00[ASN][1000 genomes]
rs10138214	0.93[ASN][1000 genomes]
rs10146746	1.00[ASN][1000 genomes]
rs10146907	0.81[ASN][1000 genomes]
rs10147210	1.00[ASN][1000 genomes]
rs10149370	1.00[ASN][1000 genomes]
rs10498398	0.93[ASN][1000 genomes]
rs11157496	1.00[ASN][1000 genomes]
rs11157497	1.00[ASN][1000 genomes]
rs11157502	0.93[ASN][1000 genomes]
rs11626664	1.00[ASN][1000 genomes]
rs11851560	1.00[ASN][1000 genomes]
rs11852175	0.93[ASN][1000 genomes]
rs12147827	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12147960	1.00[ASN][1000 genomes]
rs12147964	1.00[ASN][1000 genomes]
rs12147968	1.00[ASN][1000 genomes]
rs12147971	1.00[ASN][1000 genomes]
rs12433080	1.00[ASN][1000 genomes]
rs12433096	1.00[ASN][1000 genomes]
rs12434595	0.89[EUR][1000 genomes]
rs12436196	0.93[ASN][1000 genomes]
rs12437392	0.92[EUR][1000 genomes]
rs12437412	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12587792	0.92[ASN][1000 genomes]
rs12589974	0.93[ASN][1000 genomes]
rs1669786	0.86[ASN][1000 genomes]
rs17671850	0.93[ASN][1000 genomes]
rs1999615	0.86[ASN][1000 genomes]
rs2415951	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2415974	1.00[ASN][1000 genomes]
rs2415988	0.93[ASN][1000 genomes]
rs34934031	1.00[ASN][1000 genomes]
rs35563644	1.00[ASN][1000 genomes]
rs35878497	1.00[ASN][1000 genomes]
rs35957622	1.00[ASN][1000 genomes]
rs36113044	0.92[ASN][1000 genomes]
rs4144029	1.00[ASN][1000 genomes]
rs4424814	1.00[ASN][1000 genomes]
rs4533179	0.93[ASN][1000 genomes]
rs4611376	0.93[ASN][1000 genomes]
rs55708845	0.92[ASN][1000 genomes]
rs56144938	0.92[ASN][1000 genomes]
rs61991024	0.93[ASN][1000 genomes]
rs61991029	0.81[ASN][1000 genomes]
rs62001240	0.86[ASN][1000 genomes]
rs67686621	0.98[EUR][1000 genomes]
rs7156814	1.00[ASN][1000 genomes]
rs7157724	1.00[ASN][1000 genomes]
rs7159042	0.93[ASN][1000 genomes]
rs7159729	0.93[ASN][1000 genomes]
rs8004890	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8007908	1.00[ASN][1000 genomes]
rs8009287	1.00[ASN][1000 genomes]
rs8009432	1.00[ASN][1000 genomes]
rs8014836	1.00[ASN][1000 genomes]
rs8016249	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016371	1.00[ASN][1000 genomes]
rs8017325	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8019899	0.93[ASN][1000 genomes]
rs8020647	0.93[ASN][1000 genomes]
rs8022067	1.00[ASN][1000 genomes]
rs945024	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036267	chr14:46491828-46804734	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv470644	chr14:46504122-46799990	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1050269	chr14:46527381-46936207	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv456288	chr14:46531972-46799990	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv564736	chr14:46531972-46799990	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1036719	chr14:46588181-46873231	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv470645	chr14:46659474-46873775	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv2761411	chr14:46716963-46996307	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv2751278	chr14:46718250-47225891	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1044526	chr14:46727837-46975636	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv542084	chr14:46727837-46975636	Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv2760332	chr14:46732068-46867489	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv564740	chr14:46732760-46793087	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv518556	chr14:46777209-46795776	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
15	nsv564741	chr14:46777209-46921265	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	nsv456292	chr14:46777209-46958836	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv564742	chr14:46777209-46958836	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv832787	chr14:46779696-46935436	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
19	nsv564743	chr14:46784593-46921265	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	nsv977627	chr14:46785118-46821443	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	nsv564744	chr14:46786935-46825242	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	nsv564745	chr14:46786935-46873776	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:46790400-46791000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
2	chr14:46790400-46792400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr14:46790400-46792600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:46790400-46792800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
5	chr14:46790400-46795200	Enhancers	Primary hematopoietic stem cells	blood
6	chr14:46790600-46795400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr14:46790800-46791000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
8	chr14:46790800-46791000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
9	chr14:46790800-46791200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr14:46790800-46791600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
11	chr14:46790800-46792000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr14:46790800-46792800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell

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