Variant report

Variant	rs6731877
Chromosome Location	chr2:63848170-63848171
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10191163	0.82[EUR][1000 genomes]
rs10200146	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11125979	0.83[ASN][1000 genomes]
rs12104978	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs169035	0.87[ASN][1000 genomes]
rs1869700	0.89[ASN][1000 genomes]
rs2422008	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs262496	0.88[ASN][1000 genomes]
rs262497	0.88[ASN][1000 genomes]
rs262498	0.87[ASN][1000 genomes]
rs262499	0.87[ASN][1000 genomes]
rs262500	0.87[ASN][1000 genomes]
rs3754540	0.82[ASN][1000 genomes]
rs6735907	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6737621	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1792289	chr2:63812148-63900292	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv963239	chr2:63846496-63877130	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63844400-63865600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:63844800-63866200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:63846400-63848400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:63846800-63848200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
5	chr2:63846800-63848200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:63847200-63850000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr2:63848000-63849600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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