Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10200146	0.90[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs11125979	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11676682	0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs12104978	0.84[ASN][1000 genomes]
rs169035	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2028886	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs2034270	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs2168274	0.81[JPT][hapmap]
rs2421954	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs2422008	0.95[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs2592389	0.89[ASN][1000 genomes]
rs262496	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs262497	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs262498	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs262499	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs262500	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3754540	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6731877	0.89[ASN][1000 genomes]
rs6735907	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs6737621	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs8179835	0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1792289	chr2:63812148-63900292	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63877800-63880800	Weak transcription	Aorta	Aorta
2	chr2:63878200-63882000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:63878800-63880600	Enhancers	Liver	Liver
4	chr2:63879600-63880000	Enhancers	Fetal Brain Male	brain
5	chr2:63879600-63880000	Enhancers	HepG2	liver

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